ArticleGenome research2003
Connecting sequence and biology in the laboratory mouse.
Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- MouseCyc: a curated biochemical pathways database for the laboratory mouse.Genome biology · 2009Article
- The mouse Gene Expression Database (GXD): 2007 update.Nucleic acids research · 2007Article
- Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis.Genome biology · 2005Article
- Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system.BMC genomics · 2004Article
- The Ensembl core software libraries.Genome research · 2004Review
- Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system.BMC genomics · 2004Article
- The mouse Gene Expression Database (GXD): updates and enhancements.Nucleic acids research · 2004Article
- RTCGD: retroviral tagged cancer gene database.Nucleic acids research · 2004Article
- The Mouse Genome Database (MGD): integrating biology with the genome.Nucleic acids research · 2004Article
- G protein-coupled receptor genes in the FANTOM2 database.Genome research · 2003Article
- Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS.Genome research · 2003Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
27 authors.
Funding
Abstract
The Mouse Genome Sequencing Consortium and the RIKEN Genome Exploration Research grouphave generated large sets of sequence data representing the mouse genome and transcriptome, respectively. These data provide a valuable foundation for genomic research. The challenges for the informatics community are how to integrate these data with the ever-expanding knowledge about the roles of genes and gene products in biological processes, and how to provide useful views to the scientific community. Public resources, such as the National Center for Biotechnology Information (NCBI; http://www.ncbi.nih.gov), and model organism databases, such as the Mouse Genome Informatics database (MGI; http://www.informatics.jax.org), maintain the primary data and provide connections between sequence and biology. In this paper, we describe how the partnership of MGI and NCBI LocusLink contributes to the integration of sequence and biology, especially in the context of the large-scale genome and transcriptome data now available for the laboratory mouse. In particular, we describe the methods and results of integration of 60,770 FANTOM2 mouse cDNAs with gene records in the databases of MGI and LocusLink.
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Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.