Evidence map›Paper›PMID 12819145›Full record

ArticleGenome research2003

G protein-coupled receptor genes in the FANTOM2 database.

Yuka Kawasawa, Louise M McKenzie, David P Hill, Hidemasa Bono, Masashi Yanagisawa, RIKEN GER Group, GSL Members

Open access · hybridAbstract read
In one paragraph

Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
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  13. Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Yuka KawasawaHoward Hughes Medical Institute, Department of Molecular Genetics, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-9050, USA. Yuka.Kawasawa@UTSouthwestern.edu
Louise M McKenzie
David P Hill
Hidemasa Bono
Masashi Yanagisawa
RIKEN GER Group
GSL Members
Howard Hughes Medical Institute · USJackson Laboratory · USRIKEN Advanced Science Institute · JPRIKEN Center for Integrative Medical Sciences · JP

Funding

SOFTWARE AND DATABASE SYSTEM DEVELOPMENTP41HG000330 · NHGRI · JACKSON LABORATORY · PI EPPIG, JANAN T. · 1995 to 2010
$72.1M
Resource ProjectU41HG002273 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMAS, PAUL D. · 2012 to 2021
$34.7M
Gene Ontology ConsortiumP41HG002273 · NHGRI · JACKSON LABORATORY · PI BLAKE, JUDITH A · 2004 to 2011
$27.4M
GENE EXPRESSION DATABASE FOR MOUSE DEVELOPMENTR01HD033745 · NICHD · JACKSON LABORATORY · PI RINGWALD, MARTIN · 1996 to 2010
$10.9M
GENE ONTOLOGY CONSORTIUMR01HG002273 · NHGRI · JACKSON LABORATORY · PI BLAKE, JUDITH A · 2001 to 2003
$5.8M
MULTI-LEVEL ANALYSIS AND DISPLAY OF MOUSE GENOME DATAP01HG000330 · NHGRI · JACKSON LABORATORY · PI EPPIG, JANAN T. · 1990 to 1994
–
NHGRI NIH HHS HG002273NHGRI NIH HHS HG00330NHGRI NIH HHS P41 HG000330NHGRI NIH HHS P41 HG002273NHGRI NIH HHS R01 HG002273NHGRI NIH HHS U41 HG002273NICHD NIH HHS HD33745NICHD NIH HHS R01 HD033745PHS HHS 31222
6 · The paper itself

Abstract

G protein-coupled receptors (GPCRs) comprise the largest family of receptor proteins in mammals and play important roles in many physiological and pathological processes. Gene expression of GPCRs is temporally and spatially regulated, and many splicing variants are also described. In many instances, different expression profiles of GPCR gene are accountable for the changes of its biological function. Therefore, it is intriguing to assess the complexity of the transcriptome of GPCRs in various mammalian organs. In this study, we took advantage of the FANTOM2 (Functional Annotation Meeting of Mouse cDNA 2) project, which aimed to collect full-length cDNAs inclusively from mouse tissues, and found 410 candidate GPCR cDNAs. Clustering of these clones into transcriptional units (TUs) reduced this number to 213. Out of these, 165 genes were represented within the known 308 GPCRs in the Mouse Genome Informatics (MGI) resource. The remaining 48 genes were new to mouse, and 14 of them had no clear mammalian ortholog. To dissect the detailed characteristics of each transcript, tissue distribution pattern and alternative splicing were also ascertained. We found many splicing variants of GPCRs that may have a relevance to disease occurrence. In addition, the difficulty in cloning tissue-specific and infrequently transcribed GPCRs is discussed further.

Indexed as

Databases, GeneticReceptors, G-Protein-CoupledAlternative SplicingAnimalsDNA, ComplementaryGTP-Binding ProteinsHumansMembrane ProteinsMiceNerve Tissue ProteinsOrgan SpecificityProteomeReceptor, Anaphylatoxin C5aReceptors, Cell SurfaceReceptors, ChemokineReceptors, CytokineC5aR2 protein, humanDNA, ComplementaryGPR31 protein, humanGpr31 protein, mouseGpr37 protein, mouseGPR37 receptor, humanGPR83 protein, humanGpr83 protein, mouseG-protein-coupled receptor 34GTP-Binding ProteinsMembrane ProteinsNerve Tissue ProteinsProteomeReceptor, Anaphylatoxin C5aReceptors, Cell SurfaceReceptors, ChemokineReceptors, CytokineReceptors, GalaninReceptors, G-Protein-CoupledReceptors, LysophospholipidReceptors, NeuropeptideReceptors, OdorantReceptors, PurinergicReceptors, Purinergic P2

Identifiers

PMID12819145
PMCPMC403690
OpenAlexW2147872399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.