ArticleGenome research2003
Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection.
Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
65 citing papers in PubMed, 146 citations in OpenAlex.
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- Getting to the bottom of lncRNA mechanism: structure-function relationships.Mammalian genome : official journal of the International Mammalian Genome Society · 2022Review
- Identification of Long Non-coding RNA Transcripts inIranian journal of biotechnology · 2022Article
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- Towards structural classification of long non-coding RNAs.Biochimica et biophysica acta · 2016Article
- Paradigm shifts in genomics through the FANTOM projects.Mammalian genome : official journal of the International Mammalian Genome Society · 2015Article
- Long non-coding RNAs and their biological roles in plants.Genomics, proteomics & bioinformatics · 2015Review
- Long non-coding RNA SOX2OT: expression signature, splicing patterns, and emerging roles in pluripotency and tumorigenesis.Frontiers in genetics · 2015Review
- The dynamic epitranscriptome: N6-methyladenosine and gene expression control.Nature reviews. Molecular cell biology · 2014Review
- Characterisation of Caenorhabditis elegans sperm transcriptome and proteome.BMC genomics · 2014Article
- Expression of a non-coding RNA in ectromelia virus is required for normal plaque formation.Virus genes · 2014Article
- Gene expression of protein-coding and non-coding RNAs related to polyembryogenesis in the parasitic wasp, Copidosoma floridanum.PloS one · 2014Article
- Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation.Nucleic acids research · 2013Article
- Long noncoding RNAs in C. elegans.Genome research · 2012Article
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- Genetic dissection of the Canq1 locus governing variation in extent of the collateral circulation.PloS one · 2012Article
- Comparative transcriptome sequencing of germline and somatic tissues of the Ascaris suum gonad.BMC genomics · 2011Article
- Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.Nucleic acids research · 2011Article
- Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes.BMC medical genomics · 2011Article
5 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the sequencing and annotation of genomes and transcriptomes of several eukaryotes, the importance of noncoding RNA (ncRNA)-RNA molecules that are not translated to protein products-has become more evident. A subclass of ncRNA transcripts are encoded by highly regulated, multi-exon, transcriptional units, are processed like typical protein-coding mRNAs and are increasingly implicated in regulation of many cellular functions in eukaryotes. This study describes the identification of candidate functional ncRNAs from among the RIKEN mouse full-length cDNA collection, which contains 60,770 sequences, by using a systematic computational filtering approach. We initially searched for previously reported ncRNAs and found nine murine ncRNAs and homologs of several previously described nonmouse ncRNAs. Through our computational approach to filter artifact-free clones that lack protein coding potential, we extracted 4280 transcripts as the largest-candidate set. Many clones in the set had EST hits, potential CpG islands surrounding the transcription start sites, and homologies with the human genome. This implies that many candidates are indeed transcribed in a regulated manner. Our results demonstrate that ncRNAs are a major functional subclass of processed transcripts in mammals.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.