Evidence map›Paper›PMID 12811620›Full record

ArticleExtremophiles : life under extreme conditions2003

Purification and biological characterization of halocin C8, a novel peptide antibiotic from Halobacterium strain AS7092.

Yun Li, Hua Xiang, Jingfang Liu, Meixian Zhou, Huarong Tan

Abstract read
PubMed Publisher
In one paragraph

Article in Extremophiles : life under extreme conditions, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Halocins and CMarine drugs · 2024
    Review
  3. Halocin H4 is activated through cleavage by halolysin HlyR4.Applied and environmental microbiology · 2024
    Article
  4. Article
  5. Comparative Genomics ofMicroorganisms · 2023
    Article
  6. Biotechnological potentials of halophilic microorganisms and their impact on mankind.Beni-Suef University journal of basic and applied sciences · 2022
    Review
  7. Review
  8. Article
  9. Halolysin R4 ofApplied and environmental microbiology · 2021
    Article
  10. Review
  11. Article
  12. A Halocin Promotes DNA Uptake inFrontiers in microbiology · 2019
    Article
  13. Draft Genome Sequence ofGenome announcements · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Yun LiCenter for Molecular Microbiology, Institute of Microbiology, Chinese Academy of Sciences, 100080 Beijing, P.R. China.
Hua Xiang
Jingfang Liu
Meixian Zhou
Huarong Tan
Institute of Microbiology · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Halocins are bacteriocin-like proteins or peptides produced by many species of the family Halobacteriaceae. Halocin C8, excreted by the Halobacterium strain AS7092, is a single 6.3-kDa polypeptide with an isoelectric point of 4.4, which is sensitive to proteinase K but not to trypsin. Halocin C8 is quite stable, as it can be desalted, boiled, frozen, subjected to organic solvents, and stored in culture supernatant at 4 degrees C or in dH(2)O at -20 degrees C for more than 1 year without losing activity. The purification of this halocin was achieved by combination of tangential flow filtration (TFF), Sephadex G50 and DEAE-sepharose chromatography. The N-terminal amino acid sequence was also determined by Edman degradation. Halocin C8 appeared to have a very wide activity spectrum, including most haloarchaea and even some haloalkaliphilic rods. When a sensitive strain of Halorubrum saccharovorum was exposed to halocin C8, the treated cells swelled at the initial stage, the cell wall appeared to be nicked and the cytoplasm was then extruded out, and the whole cell was eventually completely lysed. These results indicate that halocin C8 is a novel microhalocin and its primary target might be located in the cell wall of the sensitive cells.

Indexed as

PeptidesAmino Acid SequenceAnti-Bacterial AgentsChromatography, GelElectrophoresis, Polyacrylamide GelHalobacteriumIsoelectric FocusingMolecular WeightAnti-Bacterial AgentsPeptides

Identifiers

PMID12811620
OpenAlexW2036172675

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.