Evidence map›Paper›PMID 12811510›Full record

ArticleCurrent genetics2003

Maize BMS cultured cell lines survive with massive plastid gene loss.

A Bruce Cahoon, Katherine A Cunningham, Thomas J Bollenbach, David B Stern

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Current genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

A Bruce CahoonBoyce Thompson Institute for Plant Research, Tower Road, , Ithaca, NY 14853, USA.
Katherine A Cunningham
Thomas J Bollenbach
David B Stern
Cornell University · USIthaca College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As part of developing an ex planta model system for the study of maize plastid and mitochondrial gene expression, a series of established Black Mexican Sweet (BMS) suspension cell lines was characterized. Although the initial assumption was that their organelle biochemistry would be similar enough to normal in planta cells to facilitate future work, each of the three lines was found to have plastid DNA (ptDNA) differing from control maize plants, in one case lacking as much as 70% of the genome. The other two BMS lines possessed either near-wild-type ptDNA or displayed an intermediate state of gene loss, suggesting that these clonal lines are rapidly evolving. Gene expression profiles of BMS cells varied dramatically from those in maize leaf chloroplasts, but resembled those of albino plants lacking plastid ribosomes. In spite of lacking most plastid gene expression and apparently mature rRNAs, BMS cells appear to import proteins from the cytoplasm in a normal manner. The regions retained in BMS ptDNAs point to a set of tRNA genes universally preserved among even highly reduced plastid genomes, whereas the other preserved regions may illuminate which plastid genes are truly indispensable for plant cell survival.

Indexed as

Gene DeletionGene Expression ProfilingBiolisticsCell LineChromosome MappingDNA-Directed RNA PolymerasesDNA PrimersEvolution, MolecularGreen Fluorescent ProteinsLuminescent ProteinsMicroscopy, ConfocalPlastidsProtein TransportRibulose-Bisphosphate CarboxylaseZea maysDNA-Directed RNA PolymerasesDNA PrimersGreen Fluorescent ProteinsLuminescent ProteinsRibulose-Bisphosphate Carboxylase

Identifiers

PMID12811510
OpenAlexW1972891905

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.