Evidence map›Paper›PMID 12810954›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus.

Sebastian Suerbaum, Christine Josenhans, Torsten Sterzenbach, Bernd Drescher, Petra Brandt, Monica Bell, Marcus Droge, Berthold Fartmann, Hans-Peter Fischer, Zhongming Ge and 12 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
23.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 244 citations in OpenAlex.

  1. Veterinary sciences · 2025
    Article
  2. Article
  3. Article
  4. The footprint of gut microbiota in gallbladder cancer: a mechanistic review.Frontiers in cellular and infection microbiology · 2024
    Review
  5. Article
  6. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  7. A Tripartite Efflux System Affects Flagellum Stability inInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. International journal of systematic and evolutionary microbiology · 2020
    Article
  10. Article
  11. Male-Dependent Promotion of Colitis in 129International journal of molecular sciences · 2020
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 1 institution in 1 country.

Sebastian SuerbaumInstitute of Hygiene and Microbiology, University of Würzburg, Josef-Schneider-Strasse 2, D-97080 Würzburg, Germany. ssuerbaum@hygiene.uniwuerzburg.de
Christine Josenhans
Torsten Sterzenbach
Bernd Drescher
Petra Brandt
Monica Bell
Marcus Droge
Berthold Fartmann
Hans-Peter Fischer
Zhongming Ge
Andrea Horster
Rudi Holland
Kerstin Klein
Jochen Konig
Ludwig Macko
George L Mendz
Gerald Nyakatura
David B Schauer
Zeli Shen
Jacqueline Weber
Matthias Frosch
James G Fox
University of Würzburg · DE

Funding

HELIOBACTER INDUCED HEPATITIS AND TUMORIGENESISR01CA067529 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FOX, JAMES G · 1995 to 2009
$3.2M
H. hepaticus: the pathogenesis of IBDR01DK052413 · NIDDK · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SCHAUER, DAVID B · 1998 to 2007
$2.1M
Microecology-murine gut-initiation &progression of IBDR01AI050952 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FOX, JAMES G · 2002 to 2005
$1.3M
Helicobacter hepaticus: pathogenesis of inflammatory bowel diseaseR56DK052413 · NIDDK · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FOX, JAMES G · 2008 to 2008
$310k
NCI NIH HHS P01CA26723NCI NIH HHS R01 CA067529NCI NIH HHS R01CA67529NIAID NIH HHS R01 AI050952NIAID NIH HHS R01AI50952NIDDK NIH HHS DK52413NIDDK NIH HHS R01 DK052413NIDDK NIH HHS R56 DK052413
6 · The paper itself

Abstract

Helicobacter hepaticus causes chronic hepatitis and liver cancer in mice. It is the prototype enterohepatic Helicobacter species and a close relative of Helicobacter pylori, also a recognized carcinogen. Here we report the complete genome sequence of H. hepaticus ATCC51449. H. hepaticus has a circular chromosome of 1,799,146 base pairs, predicted to encode 1,875 proteins. A total of 938, 953, and 821 proteins have orthologs in H. pylori, Campylobacter jejuni, and both pathogens, respectively. H. hepaticus lacks orthologs of most known H. pylori virulence factors, including adhesins, the VacA cytotoxin, and almost all cag pathogenicity island proteins, but has orthologs of the C. jejuni adhesin PEB1 and the cytolethal distending toxin (CDT). The genome contains a 71-kb genomic island (HHGI1) and several genomic islets whose G+C content differs from the rest of the genome. HHGI1 encodes three basic components of a type IV secretion system and other virulence protein homologs, suggesting a role of HHGI1 in pathogenicity. The genomic variability of H. hepaticus was assessed by comparing the genomes of 12 H. hepaticus strains with the sequenced genome by microarray hybridization. Although five strains, including all those known to have caused liver disease, were indistinguishable from ATCC51449, other strains lacked between 85 and 229 genes, including large parts of HHGI1, demonstrating extensive variation of genome content within the species.

Indexed as

Genome, BacterialCell MovementChemotaxisHelicobacterModels, GeneticMolecular Sequence DataOligonucleotide Array Sequence AnalysisOpen Reading FramesSequence Analysis, DNASpecies SpecificityTranscription, GeneticVirulence FactorsVirulence Factors

Identifiers

PMID12810954
PMCPMC164685
OpenAlexW2099604214

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.