Evidence map›Paper›PMID 12810948›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Determination of the membrane topology of Ost4p and its subunit interactions in the oligosaccharyltransferase complex in Saccharomyces cerevisiae.

Hyun Kim, Qi Yan, Gunnar Von Heijne, Gregory A Caputo, William J Lennarz

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Plant protein glycosylation.Glycobiology · 2016
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. A global topology map of the Saccharomyces cerevisiae membrane proteome.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  18. Dimeric organization of the yeast oligosaccharyl transferase complex.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hyun KimDepartment of Biochemistry and Cell Biology and the Institute for Cell and Developmental Biology, Stony Brook University, Stony Brook, NY 11794-5215, USA.
Qi Yan
Gunnar Von Heijne
Gregory A Caputo
William J Lennarz
Stony Brook University · USStockholm University · SE

Funding

ENZYMATIC CONVERSION OF PROTEINS TO GLYCOPROTEINSR01GM033185 · NIGMS · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI LENNARZ, WILLIAM J · 1985 to 2007
$1.5M
ENZYMATIC CONVERSION OF PROTEINS TO GLYCOPROTEINSR37GM033185 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LENNARZ, WILLIAM J · 1990 to 1999
–
NIGMS NIH HHS GM33185NIGMS NIH HHS R01 GM033185NIGMS NIH HHS R37 GM033185
6 · The paper itself

Abstract

Ost4p is a minimembrane protein containing only 36 amino acids and is a subunit of oligosaccharyltransferase (OT) in Saccharomyces cerevisiae. It was found previously when amino acid residues 18-25 of Ost4p were mutated to ionizable amino acids and defects were observed in the interaction between Ost4p and either Stt3p or Ost3p, two other components of OT. The transmembrane segment of Ost4p is likely to extend from residues 10-25. This is consistent with the finding that alpha-helicity is estimated to be 36% by CD analysis of synthetic Ost4p in liposomes. This value is in reasonable agreement with the assumption that amino acids 10-25 (16 of 36 or 44%) are transmembrane. Therefore, the mutation-sensitive region (residues 18-25) is localized to only one half of the putative transmembrane domain of Ost4p. To learn where this region of Ost4p is situated in relation to the faces of endoplasmic reticulum (ER) membrane, we determined the membrane topology of Ost4p using an in vivo method and established that it is an Nlumen-Ccyto, type I membrane protein. These results indicate that the mutation-sensitive region of Ost4p is localized in the cytoplasmic leaflet of the ER membrane. In the current study, we also observed a loss of direct interaction between Ost3p and Stt3p in the presence of ost4 temperature-sensitive mutants, which indicates Ost4p, via interactions with amino acid residues in the cytosolic leaflet of the ER membrane, functions to bind these two proteins together in a subcomplex of OT.

Indexed as

HexosyltransferasesSaccharomyces cerevisiae ProteinsCell DivisionCell MembraneCircular DichroismCytosolGlycoside HydrolasesLysineMembrane ProteinsModels, BiologicalMutationPhenotypePlasmidsPrecipitin TestsProtein BindingProtein Structure, Tertiarydolichyl-diphosphooligosaccharide - protein glycotransferaseGlycoside HydrolasesHexosyltransferasesLysineMembrane ProteinsSaccharomyces cerevisiae ProteinsSTT3 protein, S cerevisiaeTransferases

Identifiers

PMID12810948
PMCPMC164608
OpenAlexW1964973871

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.