Evidence map›Paper›PMID 12808040›Full record

ArticleMolecular biology of the cell2003

RNA polymerase III transcripts and the PTB protein are essential for the integrity of the perinucleolar compartment.

Chen Wang, Joan C Politz, Thoru Pederson, Sui Huang

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. ArcRNAs and the formation of nuclear bodies.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  6. Review
  7. Article
  8. Alcohol Intake and Abnormal Expression of Brf1 in Breast Cancer.Oxidative medicine and cellular longevity · 2019
    Review
  9. Article
  10. Article
  11. [A screening system for anti-metastatic small-molecule compounds based on perinucleolar compartment prevalence in liver cancer cells].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2017
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Pearls are novel Cajal body-like structures in the Xenopus germinal vesicle that are dependent on RNA pol III transcription.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chen WangDepartment of Cell and Molecular Biology, Northwestern University Medical School, Chicago, Illinois 60611, USA.
Joan C Politz
Thoru Pederson
Sui Huang
Northwestern University · USUniversity of Massachusetts Chan Medical School · US

Funding

RNA PROCESSING AND RIBONUCLEOPROTEINR01GM021595 · NIGMS · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI PEDERSON, THORU · 1985 to 2001
$886k
PERINUCLEOLAR COMPARTMENT AND CANCERR01CA077560 · NCI · NORTHWESTERN UNIVERSITY · PI HUANG, SUI · 1999 to 2003
$839k
NCI NIH HHS R01 CA077560NCI NIH HHS R01 CA77560NIGMS NIH HHS GM-21595
6 · The paper itself

Abstract

The perinucleolar compartment (PNC) is a nuclear substructure present in transformed cells. The PNC is defined by high concentrations of certain RNA binding proteins and a subset of small RNAs transcribed by RNA polymerase III (pol III), including the signal recognition particle RNA and an Alu RNA as reported here. To determine if the PNC is dependent on pol III transcription, HeLa cells were microinjected with the selective pol III inhibitor, Tagetin. This resulted in disassembly of the PNC, whereas inhibition of pol I by cycloheximide or pol II by alpha-amanitin did not significantly affect the PNC. However, overexpression of one of the PNC-associated RNAs from a pol II promoter followed by injection of Tagetin blocked the Tagetin-induced PNC disassembly, demonstrating that it is the RNA rather than pol III activity that is important for the PNC integrity. To elucidate the role of the PNC-associated protein PTB, its synthesis was inhibited by siRNA. This resulted in a reduction of the number of PNC-containing cells and the PNC size. Together, these findings suggest, as a working model, that PNCs may be involved in the metabolism of specific pol III transcripts in the transformed state and that PTB is one of the key elements mediating this process.

Indexed as

Alu ElementsCell NucleusHeLa CellsHumansPolypyrimidine Tract-Binding ProteinRNARNA, MessengerRNA Polymerase IIIRNA, Small InterferingSignal Recognition ParticlePolypyrimidine Tract-Binding ProteinRNARNA, MessengerRNA Polymerase IIIRNA, Small InterferingSignal Recognition Particle

Identifiers

PMID12808040
PMCPMC194890
OpenAlexW2165204241

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.