Evidence map›Paper›PMID 12807801›Full record

ArticleGenetics2003

False discovery rate in linkage and association genome screens for complex disorders.

Chiara Sabatti, Susan Service, Nelson Freimer

Registry-linked trialAbstract read
In one paragraph

Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00021840 (Genetic Epidemiology of Asthma in Costa Rica), which is not on this map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00021840 completednot on this map

Genetic Epidemiology of Asthma in Costa Rica

TypeobservationalSponsorBrigham and Women's HospitalRan2001 to 2011Enrolled4,245ConditionsAsthma, Lung Diseases
3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Trial
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  4. Article
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  11. False discovery rate control in genome-wide association studies with population structure.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Observational
  18. Article
  19. Article
  20. P values: from suggestion to superstition.Journal of investigative medicine : the official publication of the American Federation for Clinical Research · 2016
    Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chiara SabattiDepartment of Human Genetics and Statistics, University of California, Los Angeles 90095-7088, USA. csabatti@mednet.ucla.edu
Susan Service
Nelson Freimer

Funding

A GENETIC LINKAGE STUDY OF GTSR01NS040024 · NINDS · TOURETTE SYNDROME ASSOCIATION, INC · PI PAULS, DAVID L · 2000 to 2004
$9.5M
THE GENETIC EPIDEMIOLOGY OF ASTHMA IN COSTA RICAR01HL066289 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2001 to 2005
$5.2M
POPULATION GENETIC MAPPING OF TOURETTE SYNDROMER01NS037484 · NINDS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FREIMER, NELSON B. · 1998 to 2009
$4.0M
GENETIC &EPIDEMIOLOGIC STUDIES OF BIPOLAR DISORDERR01MH049499 · NIMH · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FREIMER, NELSON B · 1992 to 2006
$2.9M
MOLECULAR AND POPULATION GENETICS OF BIPOLAR DISORDERK02MH001375 · NIMH · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FREIMER, NELSON B · 1996 to 2005
$675k
NHLBI NIH HHS R01 HL66289NIMH NIH HHS K02 MH01375NIMH NIH HHS R01 MH49499NINDS NIH HHS R01 NS 37484NINDS NIH HHS R01 NS40024
6 · The paper itself

Abstract

We explore the implications of the false discovery rate (FDR) controlling procedure in disease gene mapping. With the aid of simulations, we show how, under models commonly used, the simple step-down procedure introduced by Benjamini and Hochberg controls the FDR for the dependent tests on which linkage and association genome screens are based. This adaptive multiple comparison procedure may offer an important tool for mapping susceptibility genes for complex diseases.

Indexed as

Genetic LinkageGenetic TestingModels, GeneticBipolar DisorderChromosome MappingGenetic Predisposition to DiseaseGenomeGenome, HumanHaplotypesHumansLod ScoreModels, StatisticalNormal DistributionReproducibility of Results

Identifiers

PMID12807801
PMCPMC1462572

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.