Evidence map›Paper›PMID 12805582›Full record

ArticlePlant physiology2003

Identification of Arabidopsis rat mutants.

Yanmin Zhu, Jaesung Nam, Jaime M Humara, Kirankumar S Mysore, Lan-Ying Lee, Hongbin Cao, Lisa Valentine, Jingling Li, Anthony D Kaiser, Andrea L Kopecky and 27 more

Abstract read
In one paragraph

Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Article
  2. Article
  3. Jan and mini-Jan, a model system for potato functional genomics.bioRxiv : the preprint server for biology · 2024
    Article
  4. Genomic consequences associated with Agrobacterium-mediated transformation of plants.The Plant journal : for cell and molecular biology · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Biodesign research · 2020
    Review
  12. Article
  13. Frontiers in plant science · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Yanmin ZhuDepartment of Biological Sciences, Purdue University, West Lafayette, Indiana 47907-1392, USA.
Jaesung Nam
Jaime M Humara
Kirankumar S Mysore
Lan-Ying Lee
Hongbin Cao
Lisa Valentine
Jingling Li
Anthony D Kaiser
Andrea L Kopecky
Hau-Hsuan Hwang
Saikat Bhattacharjee
Praveen K Rao
Tzvi Tzfira
Jyothi Rajagopal
HoChul Yi
Veena
Badam S Yadav
Yan M Crane
Kui Lin
Yves Larcher
Matthew J K Gelvin
Marnie Knue
Cynthia Ramos
Xiaowen Zhao
Susan J Davis
Sang-Ic Kim
C T Ranjith-Kumar
Yoo-Jin Choi
Vipin K Hallan
Sudip Chattopadhyay
Xiangzhen Sui
Alicja Ziemienowicz
Ann G Matthysse
Vitaly Citovsky
Barbara Hohn
Stanton B Gelvin

Funding

NIGMS NIH HHS GM50224
6 · The paper itself

Abstract

Limited knowledge currently exists regarding the roles of plant genes and proteins in the Agrobacterium tumefaciens-mediated transformation process. To understand the host contribution to transformation, we carried out root-based transformation assays to identify Arabidopsis mutants that are resistant to Agrobacterium transformation (rat mutants). To date, we have identified 126 rat mutants by screening libraries of T-DNA insertion mutants and by using various "reverse genetic" approaches. These mutants disrupt expression of genes of numerous categories, including chromatin structural and remodeling genes, and genes encoding proteins implicated in nuclear targeting, cell wall structure and metabolism, cytoskeleton structure and function, and signal transduction. Here, we present an update on the identification and characterization of these rat mutants.

Indexed as

MutationAgrobacterium tumefaciensArabidopsisArabidopsis ProteinsBase SequenceDNA, BacterialDNA PrimersEnzymesPlant RootsPolymerase Chain ReactionRNA, AntisenseRNA, Small InterferingArabidopsis ProteinsDNA, BacterialDNA PrimersEnzymesRNA, AntisenseRNA, Small InterferingT-DNA

Identifiers

PMID12805582
PMCPMC166992

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.