Evidence map›Paper›PMID 12805452›Full record

ArticleJournal of virology2003

Kinetic analysis of binding interaction between the subgroup A Rous sarcoma virus glycoprotein SU and its cognate receptor Tva: calcium is not required for ligand binding.

Xuemei Yu, Qing-Yin Wang, Ying Guo, Klavs Dolmer, John A T Young, Peter G W Gettins, Lijun Rong

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xuemei YuDepartment of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, Illinois 60612, USA.
Qing-Yin Wang
Ying Guo
Klavs Dolmer
John A T Young
Peter G W Gettins
Lijun Rong
University of Illinois Chicago · USUniversity of Wisconsin–Madison · US

Funding

STRUCTURE/FUNCTION OF ALPHA2M AND ITS RECEPTOR LRPR01GM054414 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI GETTINS, PETER G.W. · 1996 to 2014
$3.7M
ROLES OF A SIMPLE RECEPTOR IN RETROVIRAL INFECTIONR01CA092459 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI RONG, LIJUN · 2001 to 2005
$1.2M
CHARACTERIZING THE MECHANISMS OF ALSV ENTRY INTO CELLSR01CA070810 · NCI · UNIVERSITY OF WISCONSIN MADISON · PI YOUNG, JOHN A T · 1996 to 2004
$1.2M
ANALYSIS OF HEPATITIS C VIRUS ENTRYR03AI048056 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI RONG, LIJUN · 2000 to 2002
$233k
NCI NIH HHS CA092459NCI NIH HHS CA70810NCI NIH HHS R01 CA070810NCI NIH HHS R01 CA092459NIAID NIH HHS AI48056NIGMS NIH HHS GM54414NIGMS NIH HHS R01 GM054414
6 · The paper itself

Abstract

Tva is the receptor for subgroup A Rous sarcoma virus, and it contains a single LDL-A module which is the site of virus interaction. In this study, we expressed the entire extracellular region of Tva (referred to as Ecto-Tva) as a GST fusion protein and characterized its refolding properties. We demonstrated that the correct folding of the Ecto-Tva protein, like that of the Tva LDL-A module, is calcium dependent. We used the IAsys system to measure the kinetics of binding between the surface (SU) subunit of the viral glycoprotein and Tva in real time. We found that the Ecto-Tva protein and the Tva LDL-A module displayed similar affinities for SU, providing direct evidence that the LDL-A module of Tva is the only viral interaction domain of the receptor. Furthermore, misfolded Tva proteins displayed lower binding affinities to SU, largely due to a decrease in their association rates, suggesting that a high association rate between SU and Tva is crucial for efficient virus-host interaction. Furthermore, we found that calcium did not influence the overall binding affinity between Tva and SU. These results indicate that, although calcium is important in facilitating correct folding of the LDL-A module of Tva, it is not essential for ligand binding. Thus, these results may have broad implications for the mechanism of protein folding and ligand recognition of the LDL receptor and other members of the LDL receptor superfamily.

Indexed as

Amino Acid SequenceAvian ProteinsAvian Sarcoma VirusesCalciumCalcium-Binding ProteinsGlycoproteinsKineticsMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein BindingReceptors, VirusViral ProteinsAvian ProteinsCalciumCalcium-Binding ProteinsGlycoproteinsReceptors, VirusTva receptorViral Proteins

Identifiers

PMID12805452
PMCPMC164812
OpenAlexW2085692516

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.