Evidence map›Paper›PMID 12805227›Full record

ArticleThe EMBO journal2003

High-affinity DNA binding by a Mot1p-TBP complex: implications for TAF-independent transcription.

Orlando H Gumbs, Allyson M Campbell, P Anthony Weil

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Orlando H GumbsDepartment of Molecular Physiology and Biophysics, Vanderbilt University, School of Medicine, Nashville, TN 37232-0615, USA.
Allyson M Campbell
P Anthony Weil
Vanderbilt University · US

Funding

MOLECULAR GENETIC ANALYSIS OF YEAST TAFSR01GM052461 · NIGMS · VANDERBILT UNIVERSITY · PI WEIL, PETER ANTHONY · 1995 to 2011
$6.2M
BIOPHYSICS AND GENETICS OF TBP-TAF INTERACTION DYNAMICSR01GM058588 · NIGMS · VANDERBILT UNIVERSITY · PI WEIL, PETER ANTHONY · 1999 to 2002
$920k
Molecular Genetic Analysis of Yeast TAFsR56GM052461 · NIGMS · VANDERBILT UNIVERSITY · PI WEIL, PETER ANTHONY · 2007 to 2007
$500k
NIGMS NIH HHS GM52461NIGMS NIH HHS GM58588NIGMS NIH HHS R01 GM052461NIGMS NIH HHS R56 GM052461
6 · The paper itself

Abstract

Yeast Mot1p, an abundant conserved member of the Snf2p-ATPase family of proteins, both dissociates TBP from DNA in vitro using the energy of ATP and represses gene transcription in vivo, yet paradoxically, loss of Mot1p function also leads to decreased transcription of certain genes. We conducted experiments utilizing fluorescently labeled DNA, TBP, fluorescence anisotropy spectroscopy and native gel electrophoresis to study Mot1p action. We have made a number of observations, the most intriguing being that a stable Mot1p-TBP complex has the ability to bind TATA DNA with high affinity, albeit with dramatically altered specificity. We propose that this altered TBP-DNA recognition is integral to Mot1p's ability to regulate transcription, and further postulate that the Mot1p-TBP complex delivers TBP to TAF-independent mRNA encoding genes.

Indexed as

Transcription, GeneticAdenosine TriphosphatasesAdenosine TriphosphateDNADNA HelicasesFluorescence PolarizationFungal ProteinsGene Expression RegulationMacromolecular SubstancesProtein BindingRhodaminesSaccharomyces cerevisiae ProteinsTATA-Binding Protein Associated FactorsTATA BoxTATA-Box Binding ProteinAdenosine TriphosphatasesAdenosine TriphosphateDNADNA HelicasesFungal ProteinsMacromolecular SubstancesMOT1 protein, S cerevisiaeRhodaminesSaccharomyces cerevisiae ProteinsTATA-Binding Protein Associated FactorsTATA-Box Binding Protein

Identifiers

PMID12805227
PMCPMC162156
OpenAlexW2025495105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.