Evidence map›Paper›PMID 12802019›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

A multistep mechanism for the activation of rearrangement in the immune system.

Yanhong Ji, Jianmin Zhang, Alfred Ian Lee, Howard Cedar, Yehudit Bergman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Yanhong JiDepartment of Experimental Medicine, Hebrew University Medical School, Jerusalem 91120, Israel.
Jianmin Zhang
Alfred Ian Lee
Howard Cedar
Yehudit Bergman
Yale University · USHebrew University of Jerusalem · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rearrangement of immune receptor loci is a developmentally controlled process that takes place exclusively in lymphoid cells. We have used a stable transfection system in pre-B cells to show that DNA methylation brings about histone underacetylation, histone H3(K9) methylation, DNaseI resistance, and strong inhibition of both transcription and recombination. Strikingly, this repression is maintained in dividing cells even after removal of the original methyl groups responsible for its establishment, but in this state, rearrangement can now be induced by reacetylation of local histones using the drug Trichostatin A. This same combination of demethylation and histone acetylation is also required to activate germline transcription and recombination from the endogenous kappa locus in vivo. These results indicate that the regulation of rearrangement is carried out by a multilayered synergistic process.

Indexed as

DNA MethylationRecombination, GeneticTranscription, GeneticAnimalsCell DifferentiationCell LineChromatinDeoxyribonuclease IDNA NucleotidyltransferasesDose-Response Relationship, DrugGenes, ReporterGreen Fluorescent ProteinsHistonesHydroxamic AcidsImmune SystemLuminescent ProteinsChromatinDeoxyribonuclease IDNA NucleotidyltransferasesGreen Fluorescent ProteinsHistonesHydroxamic AcidsLuminescent ProteinsMicrococcal Nucleasetrichostatin AVDJ Recombinases

Identifiers

PMID12802019
PMCPMC164625
OpenAlexW2023653509

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.