Evidence map›Paper›PMID 12799442›Full record

ArticleNucleic acids research2003

Inactivation of the nod box distal half-site allows tetrameric NodD to activate nodA transcription in an inducer-independent manner.

Jie Feng, Qiang Li, Hai-Liang Hu, Xiao-Chun Chen, Guo-Fan Hong

Abstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Role of nodD gene product and flavonoid interactions in induction of nodulation genes in Mesorhizobium ciceri.Physiology and molecular biology of plants : an international journal of functional plant biology · 2010
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jie FengState Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue-Yang Road, Shanghai, 200031, P.R. China.
Qiang Li
Hai-Liang Hu
Xiao-Chun Chen
Guo-Fan Hong

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Rhizobium leguminosarum, NodD can activate nodA transcription in response to inducer flavonoids. Here, we show that the inducible nodA promoter contains an intrinsic part through which NodD can activate nodA transcription in an inducer-independent manner. Evidence was provided that NodD binds to target DNA through anchoring the two half-sites of the nod box as a tetramer. An imperfect inverted repeat AT-N10-GAT was found in each half-site and is critical for NodD binding. Mutation of the inverted repeat of the nod box distal half-site allowed NodD to activate nodA transcription in an inducer-independent manner in vivo, and to modulate the DNA bending of the NodD-nod box complex in the absence of inducer in vitro.

Indexed as

FlavanonesGene Expression Regulation, BacterialRegulatory Sequences, Nucleic AcidTranscriptional ActivationAcyltransferasesBacterial ProteinsBase SequenceBinding SitesFlavonoidsGene SilencingModels, GeneticMolecular Sequence DataMutationNucleic Acid ConformationPromoter Regions, GeneticRepetitive Sequences, Nucleic AcidAcyltransferasesBacterial ProteinsFlavanonesFlavonoidsnaringeninNodA protein, RhizobialesNodD protein, BacteriaTranscription Factors

Identifiers

PMID12799442
PMCPMC162245

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.