Evidence map›Paper›PMID 12799429›Full record

ArticleNucleic acids research2003

Yeast Ume6p repressor permits activator binding but restricts TBP binding at the HOP1 promoter.

Mitsuhiro Shimizu, Keiko Takahashi, Teresa M Lamb, Heisaburo Shindo, Aaron P Mitchell

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. A nucleosome positioned by alpha2/Mcm1 prevents Hap1 activator binding in vivo.Biochemical and biophysical research communications · 2007
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mitsuhiro ShimizuDepartment of Chemistry, Meisei University, Hino, Tokyo 191-8506, Japan. shimizum@chem.meisei-u.ac.jp
Keiko Takahashi
Teresa M Lamb
Heisaburo Shindo
Aaron P Mitchell
Meisei University · JP

Funding

GENETIC CONTROL OF ENTRY INTO MEIOSIS IN YEASTR01GM039531 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MITCHELL, AARON P · 1988 to 2004
$1.9M
NIGMS NIH HHS GM39531NIGMS NIH HHS R01 GM039531
6 · The paper itself

Abstract

Ume6p plays essential roles in the regulation of early meiotic genes in Saccharomyces cerevisiae. Ume6p exerts repression via recruitment of the Sin3p-Rpd3p histone deacetylase and Isw2p chromatin remodeling complexes. The transcriptional step that is ultimately inhibited by Ume6p is unknown. Here, in vivo footprinting shows that transcriptional activators Hap1p and Abf1p occupy upstream sites in repressed and derepressed promoters. In contrast, chromatin immunoprecipitation shows that TATA box-binding protein (TBP)- promoter binding is reduced upon repression of HOP1. Fusion of TBP to a zinc cluster DNA binding domain relieves repression at a HOP1 promoter modified to include the zinc cluster target site. We suggest that TBP binding is inhibited through chromatin modification by the Sin3p-Rpd3p and Isw2p complexes recruited by Ume6p.

Indexed as

Cytochromes cPromoter Regions, GeneticBinding SitesChromatinCytochrome c GroupDNA-Binding ProteinsGene Expression Regulation, FungalModels, GeneticPrecipitin TestsProtein BindingRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTrans-ActivatorsTranscription FactorsABF1 protein, S cerevisiaeChromatinCYC1 protein, S cerevisiaeCytochrome c GroupCytochromes cDNA-Binding ProteinsHAP1 protein, S cerevisiaeHOP1 protein, S cerevisiaeRepressor ProteinsSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTrans-ActivatorsTranscription FactorsUME6 protein, S cerevisiae

Identifiers

PMID12799429
PMCPMC162329
OpenAlexW1993045730

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.