Evidence map›Paper›PMID 12796301›Full record

ArticleEukaryotic cell2003

RBP38, a novel RNA-binding protein from trypanosomatid mitochondria, modulates RNA stability.

Sandro Sbicego, Juan D Alfonzo, Antonio M Estévez, Mary Anne T Rubio, Xuedong Kang, Christoph W Turck, Marian Peris, Larry Simpson

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sandro SbicegoHoward Hughes Medical Institute, University of California, Los Angeles, California 90095-1662, USA.
Juan D Alfonzo
Antonio M Estévez
Mary Anne T Rubio
Xuedong Kang
Christoph W Turck
Marian Peris
Larry Simpson
Howard Hughes Medical Institute · USUniversity of California, Los Angeles · US

Funding

FUNCTION OF THE KINETOPLAST IN THE HEMOFLAGELLATESR01AI009102 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SIMPSON, LARRY · 1985 to 2013
$7.0M
CHITOSOMES AND REGULATED SECRETION IN S CEREVISIAEF32AI009102 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZIMAN, MICHAEL · 1994 to 1996
–
FUNCTION OF THE KINETOPLAST IN THE HEMOFLAGELLATESR37AI009102 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SIMPSON, LARRY · 1990 to 1999
–
NIAID NIH HHS AI09102NIAID NIH HHS F32 AI009102NIAID NIH HHS R01 AI009102NIAID NIH HHS R37 AI009102
6 · The paper itself

Abstract

We describe here the isolation and characterization of a novel RNA-binding protein, RBP38, from Leishmania tarentolae mitochondria. This protein does not contain any known RNA-binding motifs and is highly conserved among the trypanosomatids, but no homologues were found in other organisms. Recombinant LtRBP38 binds single and double-stranded (ds) RNA substrates with dissociation constants in the 100 nM range, as determined by fluorescence polarization analysis. Downregulation of expression of the homologous gene, TbRBP38, in procyclic Trypanosoma brucei by using conditional dsRNA interference resulted in 80% reduction of steady-state levels of RNAs transcribed from both maxicircle and minicircle DNA. In organello pulse-chase labeling experiments were used to determine the stability of RNAs in mitochondria that were depleted of TbRBP38. The half-life of metabolically labeled RNA decreased from approximately 160 to approximately 60 min after depletion. In contrast, there was no change in transcriptional activity. These observations suggest a role of RBP38 in stabilizing mitochondrial RNA.

Indexed as

RNA StabilityAmino Acid SequenceAnimalsBase SequenceConserved SequenceEscherichia coliGene Expression RegulationGenes, ProtozoanLeishmaniaMitochondriaMolecular Sequence DataMolecular WeightRecombinant ProteinsRNARNA-Binding ProteinsRNA, MessengerRecombinant ProteinsRNARNA-Binding ProteinsRNA, MessengerRNA, Protozoan

Identifiers

PMID12796301
PMCPMC161464
OpenAlexW2113536491

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.