Evidence map›Paper›PMID 12796299›Full record

ArticleEukaryotic cell2003

RNA polymerase I transcribes procyclin genes and variant surface glycoprotein gene expression sites in Trypanosoma brucei.

Arthur Günzl, Thomas Bruderer, Gabriele Laufer, Bernd Schimanski, Lan-Chun Tu, Hui-Min Chung, Pei-Tseng Lee, Mary Gwo-Shu Lee

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 237 citations in OpenAlex.

  1. Article
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  6. A factor integrating transcription and repression of surface antigen genes in African trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  13. Review
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  17. Article
  18. Telomere maintenance in African trypanosomes.Frontiers in molecular biosciences · 2023
    Review
  19. Article
  20. Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Arthur GünzlMedizinisch-Naturwissenschaftliches Forschungsinstitut der Universität Tübingen, 72074 Tübingen, Germany.
Thomas Bruderer
Gabriele Laufer
Bernd Schimanski
Lan-Chun Tu
Hui-Min Chung
Pei-Tseng Lee
Mary Gwo-Shu Lee
Columbia University · USNew York University · USUniversity of Tübingen · DE

Funding

TRANSCIPTION OF PROTEIN CODING GENES IN T BRUCEIR01AI028953 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LEE, GWO-SHU MARY · 1999 to 2001
$512k
TRANSCRIPTION OF PROTEIN CODING GENES IN T BRUCEIR21AI028953 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LEE, GWO-SHU MARY · 1997 to 1997
–
TRANSCRIPTION OF THE HSP 70 LOCUS IN T BRUCEIR29AI028953 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LEE, GWO-SHU MARY · 1992 to 1996
–
NIAID NIH HHS AI28953NIAID NIH HHS R01 AI028953
6 · The paper itself

Abstract

In eukaryotes, RNA polymerase (pol) I exclusively transcribes the large rRNA gene unit (rDNA) and mRNA is synthesized by RNA pol II. The African trypanosome, Trypanosoma brucei, represents an exception to this rule. In this organism, transcription of genes encoding the variant surface glycoprotein (VSG) and the procyclins is resistant to alpha-amanitin, indicating that it is mediated by RNA pol I, while other protein-coding genes are transcribed by RNA pol II. To obtain firm proof for this concept, we generated a T. brucei cell line which exclusively expresses protein C epitope-tagged RNA pol I. Using an anti-protein C immunoaffinity matrix, we specifically depleted RNA pol I from transcriptionally active cell extracts. The depletion of RNA pol I impaired in vitro transcription initiated at the rDNA promoter, the GPEET procyclin gene promoter, and a VSG gene expression site promoter but did not affect transcription from the spliced leader (SL) RNA gene promoter. Fittingly, induction of RNA interference against the RNA pol I largest subunit in insect-form trypanosomes significantly reduced the relative transcriptional efficiency of rDNA, procyclin genes, and VSG expression sites in vivo whereas that of SL RNA, alphabeta-tubulin, and heat shock protein 70 genes was not affected. Our studies unequivocally show that T. brucei harbors a multifunctional RNA pol I which, in addition to transcribing rDNA, transcribes procyclin genes and VSG gene expression sites.

Indexed as

Gene ExpressionTranscription, GeneticAnimalsDNA, RibosomalGene Expression RegulationGenes, ProtozoanMembrane GlycoproteinsPromoter Regions, GeneticProtozoan ProteinsRNA Polymerase IRNA, ProtozoanTrypanosoma brucei bruceiVariant Surface Glycoproteins, TrypanosomaDNA, RibosomalGPEET protein, Trypanosoma bruceiMembrane Glycoproteinsprocyclic acidic repetitive protein, TrypanosomaProtozoan ProteinsRNA Polymerase IRNA, ProtozoanVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID12796299
PMCPMC161450
OpenAlexW2158208260

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.