Evidence map›Paper›PMID 12774115›Full record

ArticleNature2003

Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen.

Dawei Li, Rui Zhao, Wayne Lilyestrom, Dahai Gai, Rongguang Zhang, James A DeCaprio, Ellen Fanning, Andrzej Jochimiak, Gerda Szakonyi, Xiaojiang S Chen

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 158 papers.

0numbers the graph read from it
0cells of the map it votes in
158citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

158 citing papers in PubMed, 302 citations in OpenAlex.

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  14. Review
  15. Unlicensed origin DNA melting by MCV and SV40 polyomavirus LT proteins is independent of ATP-dependent helicase activity.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. SV40 T-antigen uses a DNA shearing mechanism to initiate origin unwinding.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. Article

98 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Dawei LiDepartment of Biochemistry and Molecular Genetics, University of Colorado Health Science Center, School of Medicine, Denver, Colorado 80262, USA.
Rui Zhao
Wayne Lilyestrom
Dahai Gai
Rongguang Zhang
James A DeCaprio
Ellen Fanning
Andrzej Jochimiak
Gerda Szakonyi
Xiaojiang S Chen
University of Colorado Hospital · USArgonne National Laboratory · USUniversity of Colorado Denver · USDana-Farber Cancer Institute · USUniversity of Colorado Health · USVanderbilt University · US

Funding

STRUCTURAL STUDIES OF PAPILLOMA VIRUSESR01AI048747 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, XIAOJIANG S · 2001 to 2005
$1.7M
NIAID NIH HHS R01 AI048747
6 · The paper itself

Abstract

The oncoprotein large tumour antigen (LTag) is encoded by the DNA tumour virus simian virus 40. LTag transforms cells and induces tumours in animals by altering the functions of tumour suppressors (including pRB and p53) and other key cellular proteins. LTag is also a molecular machine that distorts/melts the replication origin of the viral genome and unwinds duplex DNA. LTag therefore seems to be a functional homologue of the eukaryotic minichromosome maintenance (MCM) complex. Here we present the X-ray structure of a hexameric LTag with DNA helicase activity. The structure identifies the p53-binding surface and reveals the structural basis of hexamerization. The hexamer contains a long, positively charged channel with an unusually large central chamber that binds both single-stranded and double-stranded DNA. The hexamer organizes into two tiers that can potentially rotate relative to each other through connecting alpha-helices to expand/constrict the channel, producing an 'iris' effect that could be used for distorting or melting the origin and unwinding DNA at the replication fork.

Indexed as

DNA ReplicationAdenosine TriphosphateAmino Acid MotifsAmino Acid SequenceAntigens, Polyomavirus TransformingBinding SitesCrystallography, X-RayDNADNA HelicasesModels, MolecularMolecular Sequence DataMutationProtein BindingProtein Structure, QuaternaryProtein Structure, TertiarySimian virus 40Adenosine TriphosphateAntigens, Polyomavirus TransformingDNADNA HelicasesTumor Suppressor Protein p53

Identifiers

PMID12774115
OpenAlexW1980145808

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.