Evidence map›Paper›PMID 12768015›Full record

ArticleJournal of virology2003

A novel human antibody against human immunodeficiency virus type 1 gp120 is V1, V2, and V3 loop dependent and helps delimit the epitope of the broadly neutralizing antibody immunoglobulin G1 b12.

Michael B Zwick, Robert Kelleher, Richard Jensen, Aran F Labrijn, Meng Wang, Gerald V Quinnan, Paul W H I Parren, Dennis R Burton

Abstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 65 citations in OpenAlex.

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  16. Article
  17. Crystal structure of a 3B3 variant--a broadly neutralizing HIV-1 scFv antibody.Protein science : a publication of the Protein Society · 2009
    Article
  18. Article
  19. Article
  20. Libraries against libraries for combinatorial selection of replicating antigen-antibody pairs.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Michael B ZwickDepartment of Immunology, The Scripps Research Institute, La Jolla, California 92037, USA.
Robert Kelleher
Richard Jensen
Aran F Labrijn
Meng Wang
Gerald V Quinnan
Paul W H I Parren
Dennis R Burton
Scripps Research Institute · USGenmab (Netherlands) · NLUniformed Services University of the Health Sciences · US

Funding

VPA 985 IN LIVER CIRRHOSIS &ASCITESM01RR000833 · NCRR · SCRIPPS RESEARCH INSTITUTE · PI ZURAW, BRUCE L. · 1985 to 2004
$14.0M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR01AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 1992 to 2013
$5.9M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR37AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BURTON, DENNIS R. · 1995 to 2004
$2.4M
NEUTRALIZATION RESISTANCE OF HIV1R01AI037438 · NIAID · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI QUINNAN, GERALD V. · 1995 to 2005
$1.3M
ANTIBODY FC AND HIV-1 INACTIVATIONR29AI040377 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI PARREN, PAUL W · 1996 to 2000
$125k
NEUTRALIZATION RESISTANCE OF HIV-1R21AI037438 · NIAID · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI QUINNAN, GERALD V. · 1999 to 1999
–
NCRR NIH HHS M01 RR000833NCRR NIH HHS M01 RR00833NIAID NIH HHS AI33292NIAID NIH HHS AI37438NIAID NIH HHS AI40377NIAID NIH HHS R01 AI033292NIAID NIH HHS R01 AI037438NIAID NIH HHS R21 AI037438NIAID NIH HHS R37 AI033292
6 · The paper itself

Abstract

The V1/V2 and V3 loops are proximal to the CD4 binding site (CD4bs) of human immunodeficiency virus type 1 (HIV-1) gp120 and undergo conformational change upon CD4 receptor engagement by the HIV-1 envelope spike. Nearly all of the reported monoclonal antibodies (MAbs) against the CD4bs exhibit a very limited capacity to neutralize HIV-1. However, one such human MAb, immunoglobulin G1 (IgG1) b12, is uniquely able to neutralize primary isolates across subtypes with considerable potency. The molecular basis for the anti-HIV-1 activity of b12 is not fully understood but is relevant to vaccine design. Here we describe a novel human MAb, 4KG5, whose binding to monomeric gp120 is moderately enhanced by IgG1 b12. In sharp contrast, 4KG5 binding to gp120 is inhibited by soluble CD4 (sCD4) and by all other (n = 14) anti-CD4bs MAbs tested. 4KG5 is unable to recognize gp120 in which either V1, V2, or V3 has been deleted, and MAbs against the V2 or V3 loops inhibit the binding of 4KG5 to gp120. Moreover, 4KG5 is able to inhibit the binding of the CD4-induced MAbs 17b and X5 in the absence of sCD4, whereas 17b and X5 only weakly inhibit the binding of 4KG5 to gp120. Mutagenesis of gp120 provides further evidence of a discontinuous epitope of 4KG5 that is formed by the V1/V2 loop, the V3 loop, and a portion of the bridging sheet (C4). 4KG5 was isolated as a single-chain Fv from a phage display library constructed from the bone marrow of an HIV-1-seropositive subject (FDA2) whose serum neutralizes HIV-1 across subtypes. Despite its source, we observed no significant neutralization with 4KG5 against the autologous (R2) virus and several other strains of HIV-1. The results suggest a model in which antibody access to the CD4bs on the envelope spike of HIV-1 is restricted by the orientation and/or dynamics of the V1/V2 and V3 loops, and b12 avoids these restrictions.

Indexed as

Amino Acid SequenceAntibodies, MonoclonalBase SequenceBinding, CompetitiveEpitope MappingEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansImmunoglobulin GMolecular Sequence DataNeutralization TestsPeptide FragmentsAntibodies, MonoclonalEpitopesHIV AntibodiesHIV Envelope Protein gp120HIV envelope protein gp120 (135-148)HIV envelope protein gp120 (305-321)Immunoglobulin GPeptide Fragments

Identifiers

PMID12768015
PMCPMC156200
OpenAlexW1990407513

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.