Evidence map›Paper›PMID 12767982›Full record

ArticleJournal of virology2003

Complete sequence and genomic analysis of rhesus cytomegalovirus.

Scott G Hansen, Lisa I Strelow, David C Franchi, David G Anders, Scott W Wong

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 172 citations in OpenAlex.

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  16. Article
  17. Immunophenotyping of Rhesus CMV-Specific CD8 T-Cell Populations.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2021
    Article
  18. Review
  19. Article
  20. Control of Cytokines in Latent Cytomegalovirus Infection.Pathogens (Basel, Switzerland) · 2020
    Review

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Scott G HansenVaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, Oregon 97006, USA.
Lisa I Strelow
David C Franchi
David G Anders
Scott W Wong
Oregon Health & Science University · USWadsworth Center · USOregon National Primate Research Center · US

Funding

YR 50 PROJ- ROBERTS PRIMATE ISLETP51RR000163 · NCRR · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI FRUH, KLAUS J · 1985 to 2011
$140.8M
RHESUS HHV 8 HOMOLOGUE IN AIDS RELATED MALIGNANCIESR01CA075922 · NCI · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI WONG, SCOTT W · 1997 to 2024
$16.7M
REPRODUCTIVE STEROIDS AND EXPERIMENTAL STROKEK01RR000163 · NCRR · OREGON HEALTH AND SCIENCE UNIVERSITY · PI MURPHY, STEPHANIE J · 2000 to 2004
$479k
A MOLECULAR BASIS FOR THE RHESUS CYTOMEGALOVIRUS MODELR21RR015094 · NCRR · WADSWORTH CENTER · PI ANDERS, DAVID G. · 2001 to 2002
$250k
STRUCTURE &FUNCTION OF A CMV ORIGIN OF DNA REPLICATIONR01AI031249 · NIAID · WADSWORTH CENTER · PI ANDERS, DAVID G. · 1996 to 2000
$216k
STRUCTURE &FUNCTION OF A CMV ORIGIN OF DNA REPLICATIONR29AI031249 · NIAID · WADSWORTH CENTER · PI ANDERS, DAVID G. · 1991 to 1995
–
NCI NIH HHS CA75922NCI NIH HHS R01 CA075922NCRR NIH HHS K01 RR000163NCRR NIH HHS P51 RR000163NCRR NIH HHS R21 RR015094NCRR NIH HHS RR00163NCRR NIH HHS RR15094NIAID NIH HHS AI31249
6 · The paper itself

Abstract

The complete DNA sequence of rhesus cytomegalovirus (RhCMV) strain 68-1 was determined with the whole-genome shotgun approach on virion DNA. The RhCMV genome is 221,459 bp in length and possesses a 49% G+C base composition. The genome contains 230 potential open reading frames (ORFs) of 100 or more codons that are arranged colinearly with counterparts of previously sequenced betaherpesviruses such as human cytomegalovirus (HCMV). Of the 230 RhCMV ORFs, 138 (60%) are homologous to known HCMV proteins. The conserved ORFs include the structural, replicative, and transcriptional regulatory proteins, immune evasion elements, G protein-coupled receptors, and immunoglobulin homologues. Interestingly, the RhCMV genome also contains sequences with homology to cyclooxygenase-2, an enzyme associated with inflammatory processes. Closer examination identified a series of candidate exons with the capacity to encode a full-length cyclooxygenase-2 protein. Counterparts of cyclooxygenase-2 have not been found in other sequenced herpesviruses. The availability of the complete RhCMV sequence along with the ability to grow RhCMV in vitro will facilitate the construction of recombinant viral strains for identifying viral determinants of CMV pathogenicity in the experimentally infected rhesus macaque and to the development of CMV as a vaccine vector.

Indexed as

Genome, ViralSequence Analysis, DNAAnimalsCells, CulturedCytomegalovirusDNA, ViralHumansMacaca mulattaMolecular Sequence DataOpen Reading FramesPhylogenyViral ProteinsDNA, ViralViral Proteins

Identifiers

PMID12767982
PMCPMC156187
OpenAlexW2142219672

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.