Evidence map›Paper›PMID 12756333›Full record

ArticleRNA (New York, N.Y.)2003

Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting.

Jaunius Urbonavicius, Guillaume Stahl, Jérôme M B Durand, Samia N Ben Salem, Qiang Qian, Philip J Farabaugh, Glenn R Björk

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 96 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Article
  3. Article
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  5. Article
  6. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  7. Review
  8. tRNA epitranscriptome determines pathogenicity of the opportunistic pathogenProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Effect of bioactive compounds extracted fromBiotechnology reports (Amsterdam, Netherlands) · 2020
    Article
  17. tRNA Metabolism and Neurodevelopmental Disorders.Annual review of genomics and human genetics · 2019
    Review
  18. Article
  19. The mammalian mitochondrial epitranscriptome.Biochimica et biophysica acta. Gene regulatory mechanisms · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Jaunius UrbonaviciusDepartment of Molecular Biology, Umeå University, SE-90 187 Umeå, Sweden.
Guillaume Stahl
Jérôme M B Durand
Samia N Ben Salem
Qiang Qian
Philip J Farabaugh
Glenn R Björk
Umeå University · SEUniversity of Maryland, Baltimore County · USCentre National de la Recherche Scientifique · FR

Funding

The genetics of ribosomal reading frame maintenanceR01GM029480 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI FARABAUGH, PHILIP JAMES · 1985 to 2010
$2.7M
Molecular genetics of translational accuracyR56GM029480 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI FARABAUGH, PHILIP JAMES · 2007 to 2007
$323k
NIGMS NIH HHS GM-29480NIGMS NIH HHS R01 GM029480NIGMS NIH HHS R56 GM029480
6 · The paper itself

Abstract

Using mutants (tgt, mnmA(asuE, trmU), mnmE(trmE), miaA, miaB, miaE, truA(hisT), truB) of either Escherichia coli or Salmonella enterica serovar Typhimurium and the trm5 mutant of Saccharomyces cerevisiae, we have analyzed the influence by the modified nucleosides Q34, mnm(5)s(2)U34, ms(2)io(6)A37, Psi39, Psi55, m(1)G37, and yW37 on -1 frameshifts errors at various heptameric sequences, at which at least one codon is decoded by tRNAs having these modified nucleosides. The frequency of -1 frameshifting was the same in congenic strains only differing in the allelic state of the various tRNA modification genes. In fact, in one case (deficiency of mnm(5)s(2)U34), we observed a reduced ability of the undermodified tRNA to make a -1 frameshift error. These results are in sharp contrast to earlier observations that tRNA modification prevents +1 frameshifting suggesting that the mechanisms by which -1 and +1 frameshift errors occur are different. Possible mechanisms explaining these results are discussed.

Indexed as

Frameshifting, RibosomalAnticodonBase SequenceEscherichia coliModels, GeneticMutationNucleosidesRNA, TransferSaccharomyces cerevisiaeSalmonella typhimuriumAnticodonNucleosidesRNA, Transfer

Identifiers

PMID12756333
PMCPMC1370442
OpenAlexW2101386363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.