ArticleRNA (New York, N.Y.)2003
The effect of nonsense codons on splicing: a genomic analysis.
Article in RNA (New York, N.Y.), 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
9 citing papers in PubMed, 16 citations in OpenAlex.
- funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model.BMC genetics · 2019Article
- Tissue Elasticity Bridges Cancer Stem Cells to the Tumor Microenvironment Through microRNAs: Implications for a "Watch-and-Wait" Approach to Cancer.Current stem cell research & therapy · 2017Review
- Identification of donor splice sites using support vector machine: a computational approach based on positional, compositional and dependency features.Algorithms for molecular biology : AMB · 2016Article
- A statistical approach for 5' splice site prediction using short sequence motifs and without encoding sequence data.BMC bioinformatics · 2014Article
- Probing the boundaries of orthology: the unanticipated rapid evolution of Drosophila centrosomin.Genetics · 2013Article
- AUG sequences are required to sustain nonsense-codon-mediated suppression of splicing.Nucleic acids research · 2006Article
- Regulation of splicing: the importance of being translatable.RNA (New York, N.Y.) · 2004Review
- Latent splice sites and stop codons revisited.RNA (New York, N.Y.) · 2004Review
- Intrinsic differences between authentic and cryptic 5' splice sites.Nucleic acids research · 2003Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The phenomenon of nonsense-associated altered splicing raises the possibility that the recognition of in-frame nonsense codons is used generally for exon identification during pre-mRNA splicing. However, nonsense codon frequencies in pseudo exons and in regions flanking 5' splice sites are no greater than that expected by chance, arguing against the widespread use of this strategy as a means of rejecting potential splice sites.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.