Evidence map›Paper›PMID 12756304›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

A global view of the selectivity of zinc deprivation and excess on genes expressed in human THP-1 mononuclear cells.

Robert J Cousins, Raymond K Blanchard, Michael P Popp, Li Liu, Jay Cao, J Bernadette Moore, Calvert L Green

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 185 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Zinc supplementation of young men alters metallothionein, zinc transporter, and cytokine gene expression in leukocyte populations.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Trial
  4. Review
  5. Article
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  9. Zinc-chelating BET bromodomain inhibitors equally target islet endocrine cell types.American journal of physiology. Regulatory, integrative and comparative physiology · 2024
    Article
  10. [Research progress of CAR-macrophages in malignant hematological diseases].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2024
    Review
  11. Article
  12. Review
  13. Role of zinc in health and disease.Clinical and experimental medicine · 2024
    Review
  14. CAR-macrophage: Breaking new ground in cellular immunotherapy.Frontiers in cell and developmental biology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Robert J CousinsNutritional Genomics Laboratory, Food Science and Human Nutrition Department, Center for Nutritional Sciences, and Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL 32611-0370, USA. cousins@ufl.edu
Raymond K Blanchard
Michael P Popp
Li Liu
Jay Cao
J Bernadette Moore
Calvert L Green
University of Florida · US

Funding

ZINC AND THE SYNTHESIS OF ZINC BINDING PROTEINSR01DK031127 · NIDDK · UNIVERSITY OF FLORIDA · PI COUSINS, ROBERT J · 1986 to 2009
$2.9M
Zinc and the Synthesis of Binding ProteinsR56DK031127 · NIDDK · UNIVERSITY OF FLORIDA · PI COUSINS, ROBERT J · 2010 to 2010
$325k
ZINC AND THE SYTHESIS OF ZINC BINDING PROTEINSR37DK031127 · NIDDK · UNIVERSITY OF FLORIDA · PI COUSINS, ROBERT J · 1992 to 1999
–
NIDDK NIH HHS DK 31127
6 · The paper itself

Abstract

Among the micronutrients required by humans, zinc has particularly divergent modes of action. cDNA microarray and quantitative PCR technologies were used to investigate the zinc responsiveness of known genes that influence zinc homeostasis and to identify, through global screening, genes that may relate to phenotypic outcomes of altered dietary zinc intake. Human monocytic/macrophage THP-1 cells were either acutely zinc depleted, using a cell-permeable zinc-specific chelator, or were supplemented with zinc to alter intracellular zinc concentrations. Initially, genes associated with zinc homeostasis were evaluated by quantitative PCR to establish ranges for fold changes in transcript abundance that might be expected with global screening. Zinc transporter-1 and zinc transporter-7 expression increased when cellular zinc increased, whereas Zip-2 expression, the most zinc-responsive gene examined, was markedly increased by zinc depletion. Microarrays composed of approximately 22,000 elements were used to identify those genes responsive to either zinc depletion, zinc supplementation, or both conditions. Hierarchal clustering and ANOVA revealed that approximately 5% or 1,045 genes were zinc responsive. Further sorting based on this pattern of the zinc responsiveness of these genes into seven groups revealed that 104 genes were linearly zinc responsive in a positive mode (i.e., increased expression as cellular zinc increases) and 86 genes that were linearly zinc responsive in a negative mode (i.e., decreased expression as cellular zinc increases). Expression of some genes was responsive to only zinc depletion or supplementation. Categorization by function revealed numerous genes needed for host defense were among those identified as zinc responsive, including cytokine receptors and genes associated with amplification of the Th1 immune response.

Indexed as

DNA-Binding ProteinsCell LineChelating AgentsEthylenediaminesGene ExpressionGene Expression ProfilingHumansImmediate-Early ProteinsMacrophagesMonocytesOligonucleotide Array Sequence AnalysisTristetraprolinZincChelating AgentsDNA-Binding ProteinsEthylenediaminesImmediate-Early ProteinsN,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamineTristetraprolinZFP36 protein, humanZinc

Identifiers

PMID12756304
PMCPMC165811
OpenAlexW1989646523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.