Evidence map›Paper›PMID 12743273›Full record

ArticleJournal of virology2003

Complete sequence and comparative analysis of the genome of herpes B virus (Cercopithecine herpesvirus 1) from a rhesus monkey.

Ludmila Perelygina, Li Zhu, Holley Zurkuhlen, Ryan Mills, Mark Borodovsky, Julia K Hilliard

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Article
  7. Effectiveness of TRIzol in Inactivating Animal Pathogens.Applied biosafety : journal of the American Biological Safety Association · 2023
    Review
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  9. Article
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  11. Article
  12. Article
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  15. Review
  16. Article
  17. Article
  18. Understanding Primate Herpesviruses.Journal of emerging diseases and virology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ludmila PerelyginaViral Immunology Center, Department of Biology, Georgia State University, Atlanta 30303, USA. biolmp@panther.gsu.edu
Li Zhu
Holley Zurkuhlen
Ryan Mills
Mark Borodovsky
Julia K Hilliard
Georgia State University · USGeorgia Institute of Technology · US

Funding

DNA SEQUENCE DETERMINANTS OF NUCLEOSOME POSITIONINGR55GM047853 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI BORODOVSKY, MARK · 1992 to 1992
–
NCRR NIH HHS P40 RR05162NCRR NIH HHS R01 RR03162NIGMS NIH HHS GM-47853
6 · The paper itself

Abstract

The complete DNA sequence of herpes B virus (Cercopithecine herpesvirus 1) strain E2490, isolated from a rhesus macaque, was determined. The total genome length is 156,789 bp, with 74.5% G+C composition and overall genome organization characteristic of alphaherpesviruses. The first and last residues of the genome were defined by sequencing the cloned genomic termini. There were six origins of DNA replication in the genome due to tandem duplication of both oriL and oriS regions. Seventy-four genes were identified, and sequence homology to proteins known in herpes simplex viruses (HSVs) was observed in all cases but one. The degree of amino acid identity between B virus and HSV proteins ranged from 26.6% (US5) to 87.7% (US15). Unexpectedly, B virus lacked a homolog of the HSV gamma(1)34.5 gene, which encodes a neurovirulence factor. Absence of this gene was verified in two low-passage clinical isolates derived from a rhesus macaque and a zoonotically infected human. This finding suggests that B virus most likely utilizes mechanisms distinct from those of HSV to sustain efficient replication in neuronal cells. Despite the considerable differences in G+C content of the macaque and B virus genes (51% and 74.2%, respectively), codons used by B virus are optimal for the tRNA population of macaque cells. Complete sequence of the B virus genome will certainly facilitate identification of the genetic basis and possible molecular mechanisms of enhanced B virus neurovirulence in humans, which results in an 80% mortality rate following zoonotic infection.

Indexed as

Genome, ViralSequence Analysis, DNAAnimalsBase SequenceCloning, MolecularDNA, ViralHerpesvirus 1, CercopithecineHerpesvirus 1, HumanHerpesvirus 2, HumanHumansMacaca mulattaMolecular Sequence DataOpen Reading FramesViral ProteinsDNA, ViralViral Proteins

Identifiers

PMID12743273
PMCPMC155011
OpenAlexW1988950593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.