Evidence map›Paper›PMID 12743023›Full record

ArticleGenome research2003

Comparative genome organization of human, murine, and feline MHC class II region.

Naoya Yuhki, Thomas Beck, Robert M Stephens, Yoko Nishigaki, Kymberly Newmann, Stephen J O'Brien

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 101 citations in OpenAlex.

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  15. A distant trophoblast-specific enhancer controls HLA-G expression at the maternal-fetal interface.Proceedings of the National Academy of Sciences of the United States of America · 2016
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  19. Sequencing and comparative analysis of the gorilla MHC genomic sequence.Database : the journal of biological databases and curation · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Naoya YuhkiLaboratory of Genomic Diversity, National Cancer Institute-Frederick, Frederick, Maryland 21702, USA. yuhki@ncifcrf.gov
Thomas Beck
Robert M Stephens
Yoko Nishigaki
Kymberly Newmann
Stephen J O'Brien
Science Applications International Corporation (United States) · USNational Cancer Institute · USFrederick National Laboratory for Cancer Research · US

Funding

NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

To study comparative molecular dynamics in the genesis of the major histocompatibility complex (MHC), we determined a complete nucleotide sequence spanning 758,291 bp of the domestic cat (Felis catus) extended and classical class II region. The feline class II MHC includes 44 genes (31 predicted to be expressed) which display DNA sequence homology and ordered gene synteny with human HLA and mouse H2, in extended class II and centromere proximal regions (DM to DO) of the classical class II region. However, remarkable genomic alterations including gene gain and loss plus size differentials of 250 kb are evident in comparisons of the cat class II with those of human and mouse. The cat MHC lacks the entire DQ region and retains only relict pseudogene homologs of DP genes, compensated by expansion and reorganization of seven modern DR genes. Repetitive gene families within the feline MHC comprise 35% of the feline MHC with very different density and abundance of GC levels, SINES, LINES, STRs, and retro-elements from the same repeats in human and mouse MHC. Comparison of the feline MHC with the murine and human MHC offers a detailed view of the consequences of genome organization in three mammalian lineages.

Indexed as

GenomeAnimalsCatsComputational BiologyEvolution, MolecularGene OrderGenes, MHC Class IIGenome, HumanHumansMiceSynteny

Identifiers

PMID12743023
PMCPMC403645
OpenAlexW2134374259

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.