Evidence map›Paper›PMID 12730829›Full record

ArticleAmerican journal of human genetics2003

The structure of linkage disequilibrium at the DBH locus strongly influences the magnitude of association between diallelic markers and plasma dopamine beta-hydroxylase activity.

Cyrus P Zabetian, Sarah G Buxbaum, Robert C Elston, Michael D Köhnke, George M Anderson, Joel Gelernter, Joseph F Cubells

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 4 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 4 syntheses or guidelines pooled it, 87 citations in OpenAlex.

  1. Association of the rs1611115 polymorphism in DBH gene with Parkinson's disease: a meta-analysis.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2018
    Pooled it
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  6. Pharmacogenetics of Addiction Therapy.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  7. Article
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  10. Genotype-independent decrease in plasma dopamine beta-hydroxylase activity in Alzheimer's disease.Progress in neuro-psychopharmacology & biological psychiatry · 2013
    Article
  11. Article
  12. Genetic factors modulating the response to stimulant drugs in humans.Current topics in behavioral neurosciences · 2012
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Cyrus P ZabetianDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Sarah G Buxbaum
Robert C Elston
Michael D Köhnke
George M Anderson
Joel Gelernter
Joseph F Cubells
Yale University · USCase Western Reserve University · USUniversity Children's Hospital Tübingen · DE

Funding

SUBSTANCE ABUSEK12DA000167 · NIDA · YALE UNIVERSITY · PI STEPHANIE S O'MALLEY, Marc N Potenza · 1991 to 2026
$17.7M
X-LINKED EXTENSION OF THE REVISED HASEMAN-ELSTON ALGORITHM FOR LINKAGE ANALYSISP41RR003655 · NCRR · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ELSTON, ROBERT C. · 1987 to 2011
$11.5M
Linkage Disequilibrium Studies of Alcohol DependenceR01AA011330 · NIAAA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1997 to 2013
$6.4M
BIOMETRIC-GENETIC ANALYSIS OF CARDIOVASCULAR DISEASET32HL007567 · NHLBI · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ZHU, XIAOFENG · 1985 to 2021
$6.0M
Research Training Fellowship in Substance use and Addiction (RTFSA)T32DA007238 · NIDA · YALE UNIVERSITY · PI BRIAN D. KILUK, ISMENE L. PETRAKIS · 1988 to 2026
$5.7M
GENETIC ANALYSIS OF MULTIFACTORIAL TRAITSR37GM028356 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI ELSTON, ROBERT C. · 1998 to 2007
$2.9M
LABORATORY OF NEUROIMAGINGP30MH030929 · NIMH · YALE UNIVERSITY · PI HENINGER, GEORGE R · 1993 to 2000
$1.7M
GENETICS OF COCAINE INDUCED PSYCHOSISR01DA012422 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2000 to 2003
$1.1M
DBH as a Modifying Gene in Neurodegenerative DiseasesK08NS044138 · NINDS · UNIVERSITY OF WASHINGTON · PI ZABETIAN, CYRUS P · 2002 to 2006
$831k
NEUROBIOLOGY AND GENETICS OF PANIC, TS, AND OCDK02MH001387 · NIMH · YALE UNIVERSITY · PI GELERNTER, JOEL · 1996 to 2001
$213k
GENETIC ANALYSIS OF MULTIFACTORIAL TRAITSR01GM028356 · NIGMS · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ELSTON, ROBERT C. · 1985 to 1997
–
NEUROPSYCHOPHARMACOLOGY--ANALYSIS OF PSYCHOTHERAPEUTIC DRUGS AND METABOLITESP50MH030929 · NIMH · YALE UNIVERSITY · PI BOWERS, MALCOLM B · 1985 to 1992
–
NCRR NIH HHS P41 RR003655NCRR NIH HHS RR 03655NHLBI NIH HHS T32 HL007567NHLBI NIH HHS T32-HL07567NIAAA NIH HHS R01 AA011330NIAAA NIH HHS R01-AA11330NIDA NIH HHS 5T32-DA-07238NIDA NIH HHS K12 DA000167NIDA NIH HHS K-12-DA-00167NIDA NIH HHS R01 DA012422NIDA NIH HHS R01-DA12422NIDA NIH HHS T32 DA007238NIGMS NIH HHS GM 28356NIGMS NIH HHS R01 GM028356NIGMS NIH HHS R37 GM028356NIMH NIH HHS K02-MH01387NIMH NIH HHS MH 30929NIMH NIH HHS T32-MH2005NINDS NIH HHS K08 NS044138NINDS NIH HHS K08-NS44138
6 · The paper itself

Abstract

There is currently a great deal of interest in using linkage disequilibrium (LD) mapping to locate both disease and quantitative-trait loci on a genomewide scale. Recent findings suggest that much of the human genome is organized in discrete "blocks" of low haplotype diversity, but the utility of such blocks in identifying genes influencing complex traits is not yet known and must ultimately be tested empirically through use of real data. We recently identified a putative functional polymorphism (-1021C-->T) in the 5' upstream region of the DBH gene that accounted for 35%-52% of the total phenotypic variance in plasma dopamine beta-hydroxylase (DBH) activity in samples from three distinct populations. In the present study, we genotyped 11 diallelic markers at the DBH locus surrounding -1021C-->T in 386 unrelated individuals of European origin. We identified a single 10-kb block containing -1021C-->T, in which four haplotypes comprised 93% of the observed chromosomes. Only markers within the block were highly associated with phenotype (P< or =2.2 x 10(-10)), with one exception. In general, association with phenotype was strongly correlated with the degree of LD between each marker and -1021C-->T. Of four LD measures assessed, d(2) was the best predictor of this relationship. Had one attempted to map quantitative-trait loci for plasma DBH activity on a genomewide basis without prior knowledge of candidate regions and not included (by chance) markers within this haplotype block, the DBH locus might have been missed entirely. These results provide a direct example of the potential value of constructing a haplotype map of the human genome prior to embarking on large-scale association studies.

Indexed as

Linkage DisequilibriumQuantitative Trait, HeritableAdultAllelesAnalysis of VarianceDopamine beta-HydroxylaseGenetic MarkersGenome, HumanGenotypeHaplotypesHumansPhenotypePolymorphism, GeneticQuantitative Trait LociDopamine beta-HydroxylaseGenetic Markers

Identifiers

PMID12730829
PMCPMC1180300
OpenAlexW2161308948

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.