Evidence map›Paper›PMID 12730382›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS.

Ricardo V Abdelnoor, Ryan Yule, Annakaisa Elo, Alan C Christensen, Gilbert Meyer-Gauen, Sally A Mackenzie

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 1 synthesis or guideline pooled it, 251 citations in OpenAlex.

  1. Pooled it
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  7. Review
  8. Article
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  11. Review
  12. Expansion of the MutS Gene Family in Plants.bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Bioinformatics Analysis ofInternational journal of molecular sciences · 2023
    Article
  17. Article
  18. Mitochondrial Genome Sequence ofInternational journal of molecular sciences · 2023
    Article
  19. Article
  20. Article

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ricardo V AbdelnoorPlant Science Initiative, School of Biological Sciences and Beadle Center for Genetics Research, University of Nebraska, Lincoln, NE 68588-0660, USA.
Ryan Yule
Annakaisa Elo
Alan C Christensen
Gilbert Meyer-Gauen
Sally A Mackenzie
Brazilian Agricultural Research Corporation · BRUniversity of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant mitochondrial genome is retained in a multipartite structure that arises by a process of repeat-mediated homologous recombination. Low-frequency ectopic recombination also occurs, often producing sequence chimeras, aberrant ORFs, and novel subgenomic DNA molecules. This genomic plasticity may distinguish the plant mitochondrion from mammalian and fungal types. In plants, relative copy number of recombination-derived subgenomic DNA molecules within mitochondria is controlled by nuclear genes, and a genomic shifting process can result in their differential copy number suppression to nearly undetectable levels. We have cloned a nuclear gene that regulates mitochondrial substoichiometric shifting in Arabidopsis. The CHM gene was shown to encode a protein related to the MutS protein of Escherichia coli that is involved in mismatch repair and DNA recombination. We postulate that the process of substoichiometric shifting in plants may be a consequence of ectopic recombination suppression or replication stalling at ectopic recombination sites to effect molecule-specific copy number modulation.

Indexed as

Bacterial ProteinsDNA-Binding ProteinsGenome, PlantAdenosine TriphosphatasesAmino Acid SequenceArabidopsisArabidopsis ProteinsBase SequenceChromosome MappingCloning, MolecularDNA, MitochondrialDNA, PlantDNA PrimersEscherichia coli ProteinsKineticsMitochondriaAdenosine TriphosphatasesArabidopsis ProteinsBacterial ProteinsDNA-Binding ProteinsDNA, MitochondrialDNA, PlantDNA PrimersEscherichia coli ProteinsMSH1 protein, ArabidopsisMutS DNA Mismatch-Binding ProteinMutS protein, E coli

Identifiers

PMID12730382
PMCPMC156310
OpenAlexW2099708520

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.