Evidence map›Paper›PMID 12724413›Full record

ArticleMolecular and cellular biology2003

Human gene targeting by adeno-associated virus vectors is enhanced by DNA double-strand breaks.

Daniel G Miller, Lisa M Petek, David W Russell

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 125 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Targeted long-read sequencing captures CRISPR editing and AAV integration outcomes in brain.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  6. Review
  7. New approaches to moderate CRISPR-Cas9 activity: Addressing issues of cellular uptake and endosomal escape.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Review
  8. AAV-mediated gene editing lights up the lung.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Article
  9. Frontiers in microbiology · 2022
    Review
  10. Molecular therapy. Methods & clinical development · 2021
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Global Transcriptional Response to CRISPR/Cas9-AAV6-Based Genome Editing in CD34Molecular therapy : the journal of the American Society of Gene Therapy · 2018
    Article
  16. Article
  17. Delivery technologies for genome editing.Nature reviews. Drug discovery · 2017
    Review
  18. Integration of a CD19 CAR into the TCR Alpha Chain Locus Streamlines Production of Allogeneic Gene-Edited CAR T Cells.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
  19. Recombinant AAV Integration Is Not Associated With Hepatic Genotoxicity in Nonhuman Primates and Patients.Molecular therapy : the journal of the American Society of Gene Therapy · 2016
    Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Daniel G MillerDepartment of Medicine, Division of Hematology, University of Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA.
Lisa M Petek
David W Russell
University of Washington Medical Center · US

Funding

THE UW/FHCRC PROGRAM OF EXCELLENCE IN GENE THERAPYU01HL066947 · NHLBI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 2000 to 2005
$15.7M
GENE TARGETING BY VIRAL VECTORSR01DK055759 · NIDDK · UNIVERSITY OF WASHINGTON · PI RUSSELL, DAVID W · 1999 to 2017
$5.8M
GENE TARGETING STRATEGIES FOR THE TREATMENT OF OSTEOGENESIS IMPERFECTAR01AR048328 · NIAMS · UNIVERSITY OF WASHINGTON · PI RUSSELL, DAVID W · 2001 to 2010
$4.0M
Mechanisms of Cellular Transduction with AAV VectorsK08DK062100 · NIDDK · UNIVERSITY OF WASHINGTON · PI MILLER, DANIEL G · 2002 to 2006
$626k
NHLBI NIH HHS HL 66947NHLBI NIH HHS U01 HL066947NIAMS NIH HHS AR 48328NIAMS NIH HHS R01 AR048328NIDDK NIH HHS DK 55759NIDDK NIH HHS DK 62100NIDDK NIH HHS K08 DK062100NIDDK NIH HHS R01 DK055759
6 · The paper itself

Abstract

The use of adeno-associated virus (AAV) to package gene-targeting vectors as single-stranded linear molecules has led to significant improvements in mammalian gene-targeting frequencies. However, the molecular basis for the high targeting frequencies obtained is poorly understood, and there could be important mechanistic differences between AAV-mediated gene targeting and conventional gene targeting with transfected double-stranded DNA constructs. Conventional gene targeting is thought to occur by the double-strand break (DSB) model of homologous recombination, as this can explain the higher targeting frequencies observed when DSBs are present in the targeting construct or target locus. Here we compare AAV-mediated gene-targeting frequencies in the presence and absence of induced target site DSBs. Retroviral vectors were used to introduce a mutant lacZ gene containing an I-SceI cleavage site and to efficiently deliver the I-SceI endonuclease, allowing us to carry out these studies with normal and transformed human cells. Creation of DSBs by I-SceI increased AAV-mediated gene-targeting frequencies 60- to 100-fold and resulted in a precise correction of the mutant lacZ reporter gene. These experiments demonstrate that AAV-mediated gene targeting can result in repair of a DNA DSB and that this form of gene targeting exhibits fundamental similarities to conventional gene targeting. In addition, our findings suggest that the selective creation of DSBs by using viral delivery systems can increase gene-targeting frequencies in scientific and therapeutic applications.

Indexed as

DNA DamageGene TargetingGene Transfer TechniquesBlotting, SouthernCell LineCell Line, TransformedCells, CulturedDependovirusDNADNA RepairFibroblastsGenes, ReporterGenetic VectorsHumansLac OperonMutationDNA

Identifiers

PMID12724413
PMCPMC164770
OpenAlexW2164631160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.