Evidence map›Paper›PMID 12719554›Full record

ArticleJournal of virology2003

Trafficking of human immunodeficiency virus type 1-specific CD8+ T cells to gut-associated lymphoid tissue during chronic infection.

Barbara L Shacklett, Catherine A Cox, Johan K Sandberg, Neil H Stollman, Mark A Jacobson, Douglas F Nixon

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Compartmentalized cytomegalovirus replication and transmission in the setting of maternal HIV-1 infection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2014
    Trial
  4. Article
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  6. Article
  7. Review
  8. AnFrontiers in pharmacology · 2024
    Article
  9. Review
  10. Review
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  12. Chemokine receptor CCR5 correlates with functional CD8FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Barbara L ShacklettGladstone Institute of Virology and Immunology, University of California, San Francisco, California 94141-9100, USA. bshacklett@gladstone.ucsf.edu
Catherine A Cox
Johan K Sandberg
Neil H Stollman
Mark A Jacobson
Douglas F Nixon
Institute of Virology of the Slovak Academy of Sciences · SKSan Francisco General Hospital · USUniversity of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Antihypertensive Treatment in Acute Cerebral HemorrhageR01NS044976 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI QURESHI, ADNAN IQBAL · 2004 to 2006
$2.1M
HIV-SPECIFIC CTL IN EXPOSED, UNINFECTED INDIVIDUALSR21AI047746 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI SHACKLETT, BARBARA L · 2000 to 2001
$532k
NIAID NIH HHS P30 AI027763NIAID NIH HHS P30-AI27763NIAID NIH HHS R21 AI-47746NINDS NIH HHS R01 NS044976NINDS NIH HHS R21 NS-44976
6 · The paper itself

Abstract

Gut-associated lymphoid tissue (GALT) is a significant but understudied lymphoid organ, harboring a majority of the body's total lymphocyte population. GALT is also an important portal of entry for human immunodeficiency virus (HIV), a major site of viral replication and CD4(+) T-cell depletion, and a frequent site of AIDS-related opportunistic infections and neoplasms. However, little is known about HIV-specific cell-mediated immune responses in GALT. Using lymphocytes isolated from rectal biopsies, we have determined the frequency and phenotype of HIV-specific CD8(+) T cells in human GALT. GALT CD8(+) T cells were predominantly CD45RO(+) and expressed CXCR4 and CCR5. In 10 clinically stable, chronically infected individuals, the frequency of HIV Gag (SL9)-specific CD8(+) T cells was increased in GALT relative to peripheral blood mononuclear cells by up to 4.6-fold, while that of cytomegalovirus (CMV)-specific CD8(+) T cells was significantly reduced (P = 0.012). Both HIV- and CMV-specific CD8(+) T cells in GALT expressed CCR5, but only HIV-specific CD8(+) T cells expressed alpha E beta 7 integrin, suggesting that mucosal priming may account for their retention in GALT. Chronically infected individuals exhibited striking depletion of GALT CD4(+) T cells expressing CXCR4, CCR5, and alpha E beta 7 integrin, but CD4(+)/CD8(+) T-cell ratios in blood and GALT were similar. The percentage of GALT CD8(+) T cells expressing alpha E beta 7 was significantly decreased in infected individuals, suggesting that HIV infection may perturb lymphocyte retention in GALT. These studies demonstrate the feasibility of using tetramers to assess HIV-specific T cells in GALT and reveal that GALT is the site of an active CD8(+) T-cell response during chronic infection.

Indexed as

Lymphocyte ActivationAdultCD4-CD8 RatioCD8-Positive T-LymphocytesChronic DiseaseCytomegalovirusCytotoxicity, ImmunologicFemaleHIV-1HIV InfectionsHumansImmunophenotypingLymphoid TissueMaleMiddle AgedMucous Membrane

Identifiers

PMID12719554
PMCPMC154016
OpenAlexW2107938435

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.