Evidence map›Paper›PMID 12719259›Full record

ArticleBiophysical journal2003

Rationalization of membrane protein crystallization with polyethylene glycol using a simple depletion model.

Shinpei Tanaka, Mitsuo Ataka, Kazuo Onuma, Tomomi Kubota

Abstract readComparative StudyEvaluation StudyValidation Study
In one paragraph

Article in Biophysical journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. A note on the appearance of PEG in macromolecular crystals.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shinpei TanakaSpecial Division for Human Life Technology, National Institute of Advanced Industrial Science and Technology, Ikeda 563-8577, Japan.
Mitsuo Ataka
Kazuo Onuma
Tomomi Kubota

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Based on the importance of crystallizing membrane proteins in a rational way, cytochrome bc(1) complex (BC1) was crystallized using polyethylene glycol (PEG) as a sole crystallization agent. Interaction between protein-detergent complexes of BC1 was estimated by dynamic light scattering, and was compared with the numerical calculation using the Derjaguin-Landau-Verwey-Overbeek potential plus a depletion potential, without considering specific surface properties of the protein-detergent complexes. The experiments and calculation were found to be consistent and we obtained a relation between PEG molecular weight M and the range of depletion zone delta as delta approximately M(0.48+/-0.02). The stability of liquid phase of BC1 solutions was controlled by a ratio of (the range of depletion zone)/(the radius of a BC1 particle), which was consistent with recent theoretical predictions. The crystallization was most successful under a condition where the stability of the liquid phase changed from stable to unstable. The PEG molecular weight that fulfilled this condition coincided with the one used empirically to crystallize BC1 in the past by a number of groups. These results are compared to the fact that membrane proteins were often successfully crystallized close to the detergent cloud point.

Indexed as

Models, MolecularAnimalsCattleComputer SimulationCrystallizationCrystallographyDetergentsElectron Transport Complex IIIEnzyme StabilityMacromolecular SubstancesMembrane ProteinsMyocardiumPhase TransitionPolyethylene GlycolsProtein ConformationSucroseDetergentsElectron Transport Complex IIIMacromolecular SubstancesMembrane ProteinsPolyethylene GlycolsSucrosesucrose monolaurate

Identifiers

PMID12719259
PMCPMC1302890

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.