Evidence map›Paper›PMID 12719248›Full record

ArticleBiophysical journal2003

EPR spectroscopy shows a microtubule-dependent conformational change in the kinesin switch 1 domain.

Nariman Naber, Sarah Rice, Marija Matuska, Ronald D Vale, Roger Cooke, Edward Pate

Abstract read
In one paragraph

Article in Biophysical journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Shaft Function of Kinesin-1's α4 Helix in the Processive Movement.Cellular and molecular bioengineering · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. An atomic-level mechanism for activation of the kinesin molecular motors.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  14. Article
  15. The kinesin-1 motor protein is regulated by a direct interaction of its head and tail.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nariman NaberDepartment of Biochemistry and Biophysics, Department of Cellular and Molecular Pharmacology, and Cardiovascular Research Institute, University of California, San Francisco, CA 94143, USA.
Sarah Rice
Marija Matuska
Ronald D Vale
Roger Cooke
Edward Pate

Funding

MICROTUBULE-BASED ORGANELLE TRANSPORTR01GM038499 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI VALE, RONALD D · 1988 to 2005
$1.2M
NIGMS NIH HHS R01 GM038499
6 · The paper itself

Abstract

We have used site-directed spin-labeling and electron paramagnetic resonance spectroscopy to monitor a conformational change at the nucleotide site of kinesin. Cys-lite kinesin (K349 monomer) with the mutation S188C was spin labeled with MSL or MTSL. This residue is at the junction between the switch 1 region (which is a structure known to be sensitive to bound nucleotide in the G-proteins) and the alpha3-helix, adjacent to the nucleotide site. The spectra showed two or more components of mobility, which were independent of nucleotide in the absence of microtubules (MTs). The spectra of both labels showed a change of mobility upon binding to MTs. A more mobile spectral component became enhanced for all triphosphate analogs examined, AMPPNP, ADP.AlFx, or ADP.BeFx, in the presence of MTs, although the magnitude of the new component and the degree of mobility varied with nucleotide analog. The ADP state showed a much-reduced spectral change with a small shift to the more immobilized component in the presence of MTs. For kinesin.ADP.MT, a van't Hoff plot gave DeltaH degrees = -96 kJ/mol implying that the conformational change was extensive. We conclude there is a conformational change in the switch 1-alpha3-helix domain when kinesin binds to MTs.

Indexed as

Adenine NucleotidesBinding SitesCystineElectron Spin Resonance SpectroscopyKinesinsMicrotubulesMolecular Motor ProteinsNucleotidesProtein BindingProtein ConformationProtein Structure, TertiaryRecombinant ProteinsSpin LabelsTemperatureTubulinAdenine NucleotidesCystineKinesinsMolecular Motor ProteinsNucleotidesRecombinant ProteinsSpin LabelsTubulin

Identifiers

PMID12719248
PMCPMC1302879

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.