Evidence map›Paper›PMID 12717454›Full record

ArticleEMBO reports2003

Maintenance of the correct open reading frame by the ribosome.

Thomas M Hansen, Pavel V Baranov, Ivaylo P Ivanov, Raymond F Gesteland, John F Atkins

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
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  8. Review
  9. Article
  10. Article
  11. The tri-frame model.Journal of theoretical biology · 2008
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. tRNA slippage at the tmRNA resume codon.RNA (New York, N.Y.) · 2004
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas M HansenDepartment of Human Genetics, University of Utah, 15N 2030E Room 7410, Salt Lake City, UT 84112-5330, USA.
Pavel V Baranov
Ivaylo P Ivanov
Raymond F Gesteland
John F Atkins
University of Utah · US

Funding

RECODING--DYNAMIC REPROGRAMMING OF GENETIC READOUTR01GM048152 · NIGMS · UNIVERSITY OF UTAH · PI ATKINS, JOHN F. · 1992 to 2004
$2.1M
NIGMS NIH HHS GM48152NIGMS NIH HHS R01 GM048152
6 · The paper itself

Abstract

During translation, a string of non-overlapping triplet codons in messenger RNA is decoded into protein. The ability of a ribosome to decode mRNA without shifting between reading frames is a strict requirement for accurate protein biosynthesis. Despite enormous progress in understanding the mechanism of transfer RNA selection, the mechanism by which the correct reading frame is maintained remains unclear. In this report, evidence is presented that supports the idea that the translational frame is controlled mainly by the stability of codon-anticodon interactions at the P site. The relative instability of such interactions may lead to dissociation of the P-site tRNA from its codon, and formation of a complex with an overlapping codon, the process known as P-site tRNA slippage. We propose that this process is central to all known cases of +1 ribosomal frameshifting, including that required for the decoding of the yeast transposable element Ty3. An earlier model for the decoding of this element proposed 'out-of-frame' binding of A-site tRNA without preceding P-site tRNA slippage.

Indexed as

Frameshifting, RibosomalAnticodonBase PairingBinding SitesCodonCodon, TerminatorDNA Transposable ElementsEscherichia coliOpen Reading FramesPlasmidsRibosomesRNA, MessengerRNA, TransferAnticodonCodonCodon, TerminatorDNA Transposable ElementsRNA, MessengerRNA, Transfer

Identifiers

PMID12717454
PMCPMC1319180
OpenAlexW2164930421

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.