Evidence map›Paper›PMID 12709835›Full record

ArticleImmunogenetics2003

Differential methylation pattern of the X-linked lymphoproliferative (XLP) disease gene SH2D1A correlates with the cell lineage-specific transcription.

Ornella Parolini, Andreas Weinhäusel, Birgit Kagerbauer, Joachim Sassmann, Wolfgang Holter, Helmut Gadner, Oskar A Haas, Walter Knapp

Abstract read
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Article in Immunogenetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ornella ParoliniInstitute of Immunology, University of Vienna, Borschkegasse 8a, 1090, Vienna, Austria. ornella.parolini@tin.it
Andreas Weinhäusel
Birgit Kagerbauer
Joachim Sassmann
Wolfgang Holter
Helmut Gadner
Oskar A Haas
Walter Knapp

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SH2D1A, the X-linked lymphoproliferative disease (XLP) gene, encodes a cytoplasmic protein that plays an essential role in controlling Epstein-Barr virus infection. It is expressed in T and NK cells, but not in B cells or in granulocytes. The promoter, the regulatory regions, as well as the mechanisms controlling its tissue-specific expression, are still unknown. We tested the hypothesis that DNA methylation might contribute to tissue-specific SH2D1A gene expression and analyzed the methylation status of 2,300 bp upstream of the ATG starting codon, the coding region and part of intron 1. By bisulfite sequencing and methylation-sensitive restriction enzyme digestion, we show that a differential methylation pattern of CpG-rich regions in the 5' region and the adjacent exon 1 of the SH2D1A gene indeed correlates with the tissue-specific gene transcription.

Indexed as

DNA MethylationIntracellular Signaling Peptides and ProteinsAnimalsBinding SitesCarrier ProteinsComputational BiologyCpG IslandsGene Expression RegulationGene SilencingHumansLymphoproliferative DisordersSequence Analysis, DNASignaling Lymphocytic Activation Molecule Associated ProteinCarrier ProteinsIntracellular Signaling Peptides and ProteinsSH2D1A protein, humanSignaling Lymphocytic Activation Molecule Associated Protein

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.