Evidence map›Paper›PMID 12704244›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Molecular characterization of the 1,3-propanediol (1,3-PD) operon of Clostridium butyricum.

Céline Raynaud, Patricia Sarçabal, Isabelle Meynial-Salles, Christian Croux, Philippe Soucaille

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. The potential of native and engineered Clostridia for biomass biorefining.Frontiers in bioengineering and biotechnology · 2024
    Review
  5. Article
  6. Article
  7. The BJournal of inorganic biochemistry · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Recent Progress in the Understanding and Engineering of Coenzyme BFrontiers in bioengineering and biotechnology · 2020
    Review
  13. Article
  14. l-Rhamnose Metabolism in Clostridium beijerinckii Strain DSM 6423.Applied and environmental microbiology · 2019
    Article
  15. Review
  16. Article
  17. Metabolic engineering ofBiotechnology for biofuels · 2019
    Article
  18. Article
  19. Role ofFrontiers in microbiology · 2018
    Review
  20. New tricks for the glycyl radical enzyme family.Critical reviews in biochemistry and molecular biology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Céline RaynaudLaboratoire de Biotechnologies-Bioprocédés, UMR-CNRS 5504, Unité de Recherche Institut National de la Recherche Agronomique 792, Centre de Bioingénierie Gilbert Durand, Institut National des Sciences Appliquées, Toulouse, France.
Patricia Sarçabal
Isabelle Meynial-Salles
Christian Croux
Philippe Soucaille

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genes encoding the 1,3-propanediol (1,3-PD) operon of Clostridium butyricum VPI1718 were characterized from a molecular and a biochemical point of view. This operon is composed of three genes, dhaB1, dhaB2, and dhaT. When grown in a vitamin B12-free mineral medium with glycerol as carbon source, Escherichia coli expressing dhaB1, dhaB2, and dhaT produces 1,3-PD and high glycerol dehydratase and 1,3-PD dehydrogenase activities. dhaB1 and dhaB2 encode, respectively, a new type of glycerol dehydratase and its activator protein. The deduced proteins DhaB1 and DhaB2, with calculated molecular masses of 88,074 and 34,149 Da, respectively, showed no homology with the known glycerol dehydratases that are all B12 dependent but significant similarity with the pyruvate formate lyases and pyruvate formate lyases activating enzymes and their homologues. The 1,158-bp dhaT gene codes for a 1,3-PD dehydrogenase with a calculated molecular mass of 41,558 Da, revealing a high level of identity with other DhaT proteins from natural 1,3-PD producers. The expression of the 1,3-PD operon in C. butyricum is regulated at the transcriptional level, and this regulation seems to involve a two-component signal transduction system DhaASDhaA, which may have a similar function to DhaR, a transcriptional regulator found in other natural 1,3-PD producers. The discovery of a glycerol dehydratase, coenzyme B12 independent, should significantly influence the development of an economical vitamin B12-free biological process for the production of 1,3-PD from renewable resources.

Indexed as

Genes, BacterialOperonAlcohol DehydrogenaseAlcohol OxidoreductasesAmino Acid SequenceClostridiumEscherichia coliFermentationHydro-LyasesMolecular Sequence DataSequence Homology, Amino AcidTranscription, Genetic1,3-propanediol dehydrogenaseAlcohol DehydrogenaseAlcohol Oxidoreductasesglycerol dehydrataseHydro-Lyases

Identifiers

PMID12704244
PMCPMC154289

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.