Evidence map›Paper›PMID 12702813›Full record

ArticleRNA (New York, N.Y.)2003

RNA binding and intramolecular interactions modulate the regulation of gene expression by nuclear factor 110.

Trevor W Reichman, Michael B Mathews

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Trevor W ReichmanDepartment of Biochemistry and Molecular Biology, New Jersey Medical School and the Graduate School of Biomedical Sciences, University of Medicine and Dentistry of New Jersey, Newark 01701-1709, USA.
Michael B Mathews
Rutgers, The State University of New Jersey · US

Funding

Functions of Double-stranded RNA Binding ProteinsR01AI034552 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI MATHEWS, MICHAEL B · 1993 to 2008
$4.4M
NIAID NIH HHS R01 AI034552NIAID NIH HHS R01 AI34552
6 · The paper itself

Abstract

Nuclear factor 110 (NF110) belongs to the nuclear factor 90 (NF90) family of double-stranded RNA (dsRNA) binding proteins that regulate gene expression at the transcriptional level in vertebrates. The proteins are identical at their N terminus, which functions as a negative regulatory region, but have distinct C termini as a result of alternate splicing. Maximal transcriptional activity of NF110 requires its C-terminal domain and a central domain that contains a nuclear localization signal and two dsRNA-binding motifs (dsRBMs). We find that dsRNA binding is reduced by RGG and GQSY motifs present in the C-terminal region. To directly evaluate the role of RNA binding in transactivation, we conducted site-directed mutagenesis to substitute conserved residues in one or both of the dsRBMs. The mutations reduced the ability of NF110 to stimulate gene expression to an extent that paralleled the mutants' reduced ability to bind dsRNA. Full activity was restored when the dsRBM-containing region of NF110 was replaced with the RNA-binding region of the protein kinase PKR. Finally, NF110-mediated transactivation was inhibited by cotransfection of a plasmid encoding an artificial highly structured RNA. These data suggest that NF110 and its homologs are regulated by cis-acting domains present in some of the protein isoforms, and via interactions with RNAs that bind to their dsRBMs. We propose a model in which structured RNAs regulate gene expression by modulating transcription through interactions with members of the NF90 protein family.

Indexed as

Nuclear ProteinsBase SequenceBinding SitesDNA-Binding ProteinsGene Expression RegulationGenes, ReporterHeLa CellsHumansModels, BiologicalNFATC Transcription FactorsNuclear Factor 90 ProteinsProtein Structure, TertiaryRNA-Binding ProteinsRNA, Double-StrandedTranscription FactorsDNA-Binding ProteinsNFATC Transcription FactorsNuclear Factor 90 ProteinsNuclear ProteinsRNA-Binding ProteinsRNA, Double-StrandedTranscription Factors

Identifiers

PMID12702813
PMCPMC1370420
OpenAlexW2097096575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.