Evidence map›Paper›PMID 12700664›Full record

ArticleOncogene2003

p16 INK4a gene promoter variation and differential binding of a repressor, the ras-responsive zinc-finger transcription factor, RREB.

Shuling Zhang, Xiaolan Qian, Chanelle Redman, Valeri Bliskovski, Edward S Ramsay, Douglas R Lowy, Beverly A Mock

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Oncogene, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Loss ofbioRxiv : the preprint server for biology · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Transcription Factor RREB1: from Target Genes towards Biological Functions.International journal of biological sciences · 2020
    Review
  15. The transcription factor MZF1 differentially regulates murineThe Journal of biological chemistry · 2019
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Shuling ZhangLaboratory of Genetics, Center for Cancer Research, Bethesda, MD 20892-4255, USA.
Xiaolan Qian
Chanelle Redman
Valeri Bliskovski
Edward S Ramsay
Douglas R Lowy
Beverly A Mock
Center for Cancer Research · US

Funding

Tumor gene expression in vitro and in vivoZIABC008905 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LOWY, DOUGLAS R. · 2009 to 2025
$14.3M
The Genetics of Susceptibility to Mouse Plasma Cell TumorsZIABC010008 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MOCK, BEVERLY · 2009 to 2025
$9.0M
THE GENETICS OF SUSCEPTIBILITY TO MOUSE PLASMA CELL TUMORSZ01BC010008 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MOCK, BEVERLY A. · 1996 to 2008
$1.7M
TUMOR GENE EXPRESSION IN VITRO AND IN VIVOZ01BC008905 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LOWY, DOUGLAS R. · 1996 to 2008
$1.2M
6 · The paper itself

Abstract

BALB/c mice are susceptible to the development of pristane-induced plasma cell tumors, and have a rare allelic variant in the coding region of the p16(INK4a) (p16) tumor suppressor gene that produces a protein with impaired activity. We have now found that the BALB/c p16 promoter has an allelic variant that may also compromise p16 activity. Following pristane treatment, BALB/c p16 mRNA levels in B cells were lower than that in DBA/2 or C.D2-Pctr1, a resistant BALB/c congenic strain that harbors DBA/2 chromatin surrounding the p16 locus. Four sequence variants were found between BALB/c and DBA/2 in the p16 promoter region. In reporter assays, the DBA promoter was at least four times more active in driving luciferase expression than the BALB/c promoter. Most of the difference in activity was localized to a single nucleotide deletion in BALB/c. This deletion created a consensus binding site for RREB, a ras-responsive transcriptional element with zinc-finger binding motifs. Transient transfections with RREB confirmed that the p16 promoter can be downregulated by RREB, in a Ras- or Mek-dependent manner, and that the BALB/c promoter is more sensitive than DBA/2 to regulation by RREB. BALB/c mice have both regulatory and coding region defects that may contribute to the impairment of p16 gene function.

Indexed as

Genes, p163T3 CellsAllelesAnimalsAnimals, CongenicBinding SitesB-LymphocytesConsensus SequenceDNA-Binding ProteinsDNA Mutational AnalysisGene Expression RegulationGenes, ReporterGenetic Predisposition to DiseaseGenetic VariationLuciferasesMAP Kinase Kinase 1DNA-Binding ProteinsLuciferasesMAP2K1 protein, humanMap2k1 protein, mouseMAP Kinase Kinase 1Mitogen-Activated Protein Kinase KinasespristaneProtein Serine-Threonine Kinasesras ProteinsRecombinant Fusion ProteinsRNA, MessengerRREB1 protein, humanTerpenesTranscription Factors

Identifiers

PMID12700664
OpenAlexW2007579725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.