Evidence map›Paper›PMID 12700351›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

A 1-Mb resolution radiation hybrid map of the canine genome.

Richard Guyon, Travis D Lorentzen, Christophe Hitte, Lisa Kim, Edouard Cadieu, Heidi G Parker, Pascale Quignon, Jennifer K Lowe, Corinne Renier, Boris Gelfenbeyn and 7 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed.

  1. A comprehensive review of genomic perspectives of canine diseases as a model to study human disorders.Canadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2023
    Review
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  15. Genetics of behavior in the silver fox.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Review
  16. Genetic and phenotypic variations of inherited retinal diseases in dogs: the power of within- and across-breed studies.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Review
  17. Annotation of the domestic dog genome sequence: finding the missing genes.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Article
  18. Article
  19. Article
  20. Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Richard GuyonUnité Mixte de Recherche 6061, Centre National de la Recherche Scientifique, Génétique et Développement, Faculté de Médecine, 35043 Rennes Cédex, France.
Travis D Lorentzen
Christophe Hitte
Lisa Kim
Edouard Cadieu
Heidi G Parker
Pascale Quignon
Jennifer K Lowe
Corinne Renier
Boris Gelfenbeyn
Françoise Vignaux
Hawkins B DeFrance
Stephanie Gloux
Gregory G Mahairas
Catherine André
Francis Galibert
Elaine A Ostrander

Funding

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
A High Density Gene Map of the Canine GenomeR01CA092167 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TRASK, BARBARA J. · 2002 to 2004
$1.7M
NCI NIH HHS R01 CA092167NCI NIH HHS R01CA-92167NHGRI NIH HHS T32 HG000035NHGRI NIH HHS T32 HG00035NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM07270
6 · The paper itself

Abstract

The purebred dog population consists of >300 partially inbred genetic isolates or breeds. Restriction of gene flow between breeds, together with strong selection for traits, has led to the establishment of a unique resource for dissecting the genetic basis of simple and complex mammalian traits. Toward this end, we present a comprehensive radiation hybrid map of the canine genome composed of 3,270 markers including 1,596 microsatellite-based markers, 900 cloned gene sequences and ESTs, 668 canine-specific bacterial artificial chromosome (BAC) ends, and 106 sequence-tagged sites. The map was constructed by using the RHDF5000-2 whole-genome radiation hybrid panel and computed by using MULTIMAP and TSP/CONCORDE. The 3,270 markers map to 3,021 unique positions and define an average intermarker distance corresponding to 1 Mb. We also define a minimal screening set of 325 highly informative well spaced markers, to be used in the initiation of genome-wide scans. The well defined synteny between the dog and human genomes, established in part as a function of this work by the identification of 85 conserved fragments, will allow follow-up of initial findings of linkage by selection of candidate genes from the human genome sequence. This work continues to define the canine system as the method of choice in the pursuit of the genes causing mammalian variation and disease.

Indexed as

GenomeAnimalsChromosomes, Artificial, BacterialCricetinaeDogsExpressed Sequence TagsHybrid CellsMicrosatellite RepeatsPolymorphism, Single Nucleotide

Identifiers

PMID12700351
PMCPMC154339

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.