Evidence map›Paper›PMID 12697064›Full record

ArticleBMC developmental biology2003

IfkA, a presumptive eIF2 alpha kinase of Dictyostelium, is required for proper timing of aggregation and regulation of mound size.

Rui Fang, Yanhua Xiong, Charles K Singleton

Open access · bronzeAbstract read
In one paragraph

Article in BMC developmental biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. UsingFrontiers in cell and developmental biology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Rui FangDepartment of Biological Sciences, Vanderbilt University, VU Station B 351634, Nashville TN 37235-1634, USA. rfang@partners.com
Yanhua Xiong
Charles K Singleton
Vanderbilt University · US

Funding

REGULATION OF DEVELOPMENT BY PHOSPHORELAY SIGNALINGR01GM059358 · NIGMS · VANDERBILT UNIVERSITY · PI SINGLETON, CHARLES K · 1999 to 2002
$695k
NIGMS NIH HHS R01 GM59358
6 · The paper itself

Abstract

backgroundThe transition from growth to development in Dictyostelium is initiated by amino acid starvation of growing amobae. In other eukaryotes, a key sensor of amino acid starvation and mediator of the resulting physiological responses is the GCN2 protein, an eIF2alpha kinase. GCN2 downregulates the initiation of translation of bulk mRNA and enhances translation of specific mRNAs by phosphorylating the translation initiation factor eIF2alpha. Two eIF2alpha kinases were identified in Dictyostelium and studied herein.

resultsNeither of the eIF2alpha kinases appeared to be involved in sensing amino acid starvation to initiate development. However, one of the kinases, IfkA, was shown to phosphorylate eIF2alpha from 1 to 7 hours after the onset of development, resulting in a shift from polysomes to free ribosomes for bulk mRNA. In the absence of the eIF2alpha phosphorylation, ifkA null cells aggregated earlier than normal and formed mounds and ultimately fruiting bodies that were larger than normal. The early aggregation phenotype in ifkA null cells reflected an apparent, earlier than normal establishment of the cAMP pulsing system. The large mound phenotype resulted from a reduced extracellular level of Countin, a component of the counting factor that regulates mound size. In wild type cells, phosphorylation of eIF2alpha by IfkA resulted in a specific stabilization and enhanced translational efficiency of countin mRNA even though reduced translation resulted for bulk mRNA.

conclusionsIfkA is an eIF2alpha kinase of Dictyostelium that normally phosphorylates eIF2alpha from 1 to 7 hours after the onset of development, or during the preaggregation phase. This results in an overall reduction in the initiation of protein synthesis during this time frame and a concomitant reduction in the number of ribosomes associated with most mRNAs. For some mRNAs, however, initiation of protein synthesis is enhanced or stabilized under the conditions of increased eIF2alpha phosphorylation. This includes countin mRNA.

Indexed as

Amino AcidsAmino Acid SequenceAnimalsCell LineCyclic AMPDictyosteliumDrosophila ProteinseIF-2 KinaseGene Expression RegulationGene Expression Regulation, EnzymologicMolecular Sequence DataMutationPhosphorylationProtein BiosynthesisProtein KinasesProtein Serine-Threonine KinasesAmino Acidscountin protein, Dictyostelium discoideumCyclic AMPDrosophila ProteinseIF-2 KinaseGCN2 protein, S cerevisiaeProtein KinasesProtein Serine-Threonine KinasesProtozoan ProteinsRNA, MessengerRNA, ProtozoanSaccharomyces cerevisiae Proteins

Identifiers

PMID12697064
PMCPMC154100
OpenAlexW2161223493

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.