Evidence map›Paper›PMID 12694625›Full record

ArticleMolecular microbiology2003

Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis.

Heui-Dong Park, Kristi M Guinn, Maria I Harrell, Reiling Liao, Martin I Voskuil, Martin Tompa, Gary K Schoolnik, David R Sherman

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 385 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
385citing papers in PubMed, 1 pooled it
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

385 citing papers in PubMed, 1 synthesis or guideline pooled it, 726 citations in OpenAlex.

  1. Pooled it
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  16. Recent Characterization of Key Proteins to Combat Tuberculosis.Advances in experimental medicine and biology · 2026
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  18. Protein Architecture and Composition in Mycobacterium tuberculosis.Advances in experimental medicine and biology · 2026
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325 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Heui-Dong ParkDepartment of Pathobiology, University of Washington, Seattle, WA 98195, USA.
Kristi M Guinn
Maria I Harrell
Reiling Liao
Martin I Voskuil
Martin Tompa
Gary K Schoolnik
David R Sherman
University of Washington · USStanford Medicine · US

Funding

Hypoxia, Latency and Reactivation in M.tuberculosisR01AI047744 · NIAID · UNIVERSITY OF WASHINGTON · PI SHERMAN, DAVID R · 2002 to 2006
$1.5M
MTB--MYCOLIC ACID BIOSYNTHETIC AND REGULATORY GENESR01AI044826 · NIAID · STANFORD UNIVERSITY · PI SCHOOLNIK, GARY K · 1999 to 2003
$1.3M
Discovering Motifs From Orthologous SequencesR01HG002602 · NHGRI · UNIVERSITY OF WASHINGTON · PI TOMPA, MARTIN · 2002 to 2004
$981k
Hypoxia, Latency and Reactivation in M tuberculosisR21AI047744 · NIAID · UNIVERSITY OF WASHINGTON · PI SHERMAN, DAVID R · 2001 to 2001
$322k
NHGRI NIH HHS HG02602-01NHGRI NIH HHS R01 HG002602NIAID NIH HHS AI44826NIAID NIH HHS AI47744NIAID NIH HHS R01 AI044826NIAID NIH HHS R01 AI047744NIAID NIH HHS R21 AI047744
6 · The paper itself

Abstract

Unlike many pathogens that are overtly harmful to their hosts, Mycobacterium tuberculosis can persist for years within humans in a clinically latent state. Latency is often linked to hypoxic conditions within the host. Among M. tuberculosis genes induced by hypoxia is a putative transcription factor, Rv3133c/DosR. We performed targeted disruption of this locus followed by transcriptome analysis of wild-type and mutant bacilli. Nearly all the genes powerfully regulated by hypoxia require Rv3133c/DosR for their induction. Computer analysis identified a consensus motif, a variant of which is located upstream of nearly all M. tuberculosis genes rapidly induced by hypoxia. Further, Rv3133c/DosR binds to the two copies of this motif upstream of the hypoxic response gene alpha-crystallin. Mutations within the binding sites abolish both Rv3133c/DosR binding as well as hypoxic induction of a downstream reporter gene. Also, mutation experiments with Rv3133c/DosR confirmed sequence-based predictions that the C-terminus is responsible for DNA binding and that the aspartate at position 54 is essential for function. Together, these results demonstrate that Rv3133c/DosR is a transcription factor of the two-component response regulator class, and that it is the primary mediator of a hypoxic signal within M. tuberculosis.

Indexed as

Gene Expression Regulation, BacterialAspartic AcidBacterial ProteinsGenes, ReporterGene TargetingHumansHypoxiaMycobacterium tuberculosisOligonucleotide Array Sequence AnalysisOxygenProtein BindingRegulatory Sequences, Nucleic AcidTranscription FactorsTuberculosisAspartic AcidBacterial ProteinsOxygenTranscription Factors

Identifiers

PMID12694625
PMCPMC1992516
OpenAlexW2120842435

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.