Evidence map›Paper›PMID 12692324›Full record

ArticlePlant physiology2003

New insight into Phaeodactylum tricornutum fatty acid metabolism. Cloning and functional characterization of plastidial and microsomal delta12-fatty acid desaturases.

Frédéric Domergue, Patricia Spiekermann, Jens Lerchl, Christoph Beckmann, Oliver Kilian, Peter G Kroth, Wilhem Boland, Ulrich Zähringer, Ernst Heinz

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 149 citations in OpenAlex.

  1. Review
  2. Article
  3. Diatom triacylglycerol metabolism: from carbon fixation to lipid droplet degradation.Biological reviews of the Cambridge Philosophical Society · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Compound-specific stable hydrogen isotope (δRapid communications in mass spectrometry : RCM · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. In Silico Analysis of Partial Fatty Acid Desaturase 2 cDNA FromBioinformatics and biology insights · 2021
    Article
  18. Unique fatty acid desaturase capacities uncovered inPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  19. Stable isotopes of fatty acids: current and future perspectives for advancing trophic ecology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Frédéric DomergueInstitut für Allgemeine Botanik, Universität Hamburg, Ohnhorststrasse 18, Germany. fredDo@botanik.uni-hamburg.de
Patricia Spiekermann
Jens Lerchl
Christoph Beckmann
Oliver Kilian
Peter G Kroth
Wilhem Boland
Ulrich Zähringer
Ernst Heinz
Universität Hamburg · DEUniversity of Konstanz · DEBASF (Germany) · DECarl Zeiss (Germany) · DEMax Planck Institute for Chemical Ecology · DEResearch Center Borstel - Leibniz Lung Center · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In contrast to 16:3 plants like rapeseed (Brassica napus), which contain alpha-linolenic acid (18:3(Delta9,12,15)) and hexadecatrienoic acid (16:3(Delta7,10,13)) as major polyunsaturated fatty acids in leaves, the silica-less diatom Phaeodactylum tricornutum contains eicosapentaenoic acid (EPA; 20:5(Delta5,8,11,14,17)) and a different isomer of hexadecatrienoic acid (16:3(Delta6,9,12)). In this report, we describe the characterization of two cDNAs having sequence homology to Delta12-fatty acid desaturases from higher plants. These cDNAs were shown to code for a microsomal and a plastidial Delta12-desaturase (PtFAD2 and PtFAD6, respectively) by heterologous expression in yeast (Saccharomyces cerevisiae) and Synechococcus, respectively. Using these systems in the presence of exogenously supplied fatty acids, the substrate specificities of the two desaturases were determined and compared with those of the corresponding rapeseed enzymes (BnFAD2 and BnFAD6). The microsomal desaturases were similarly specific for oleic acid (18:1(Delta9)), suggesting that PtFAD2 is involved in the biosynthesis of EPA. In contrast, the plastidial desaturase from the higher plant and the diatom clearly differed. Although the rapeseed plastidial desaturase showed high activity toward the omega9-fatty acids 18:1(Delta9) and 16:1(Delta7), in line with the fatty acid composition of rapeseed leaves, the enzyme of P. tricornutum was highly specific for 16:1(Delta9). Our results indicate that in contrast to EPA, which is synthesized in the microsomes, the hexadecatrienoic acid isomer found in P. tricornutum (16:3(Delta6,9,12)) is of plastidial origin.

Indexed as

Amino Acid SequenceCloning, MolecularCyanobacteriaDiatomsFatty Acid DesaturasesFatty AcidsGene ExpressionMicrosomesMolecular Sequence DataOpen Reading FramesOrganisms, Genetically ModifiedPhylogenyPlastidsSequence AlignmentSubstrate SpecificityYeastsFatty Acid DesaturasesFatty Acids

Identifiers

PMID12692324
PMCPMC166921
OpenAlexW1977648825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.