Evidence map›Paper›PMID 12684538›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

A network of rice genes associated with stress response and seed development.

Bret Cooper, Joseph D Clarke, Paul Budworth, Joel Kreps, Don Hutchison, Sylvia Park, Sonia Guimil, Molly Dunn, Peter Luginbühl, Cinzia Ellero and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 265 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
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  12. Cracking the Floral Quartet Code: How Do Multimers of MIKCInternational journal of molecular sciences · 2023
    Review
  13. Article
  14. Overexpression ofFrontiers in plant science · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Overexpression ofInternational journal of molecular sciences · 2022
    Article
  19. Article
  20. Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Bret CooperTorrey Mesa Research Institute, 3115 Merryfield Row, San Diego, CA 92121, USA. bcooper912@worldnet.att.net
Joseph D Clarke
Paul Budworth
Joel Kreps
Don Hutchison
Sylvia Park
Sonia Guimil
Molly Dunn
Peter Luginbühl
Cinzia Ellero
Stephen A Goff
Jane Glazebrook
Torrey Pines Institute For Molecular Studies · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We used a systematic approach to build a network of genes associated with developmental and stress responses in rice by identifying interaction domains for 200 proteins from stressed and developing tissues, by measuring the associated gene expression changes in different tissues exposed to a variety of environmental, biological, and chemical stress treatments, and by localizing the cognate genes to regions of stress-tolerance trait genetic loci. The integrated data set suggests that similar genes respond to environmental cues and stresses, and some may also regulate development. We demonstrate that the data can be used to correctly predict gene function in monocots and dicots. As a result, we have identified five genes that contribute to disease resistance in Arabidopsis.

Indexed as

Genes, Plant14-3-3 ProteinsArabidopsisDNA, PlantGene ExpressionMolecular Sequence DataOryzaPhenotypePhosphoprotein PhosphatasesPlant DiseasesPlant ProteinsPlants, Genetically ModifiedProtein SubunitsQuantitative Trait LociSeedsTranscription Factors14-3-3 ProteinsDNA, PlantPhosphoprotein PhosphatasesPlant ProteinsProtein SubunitsTranscription FactorsTyrosine 3-Monooxygenase

Identifiers

PMID12684538
PMCPMC153660
OpenAlexW2138580399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.