Evidence map›Paper›PMID 12682123›Full record

ArticleJournal of clinical microbiology2003

Detection of Sporothrix schenckii in clinical samples by a nested PCR assay.

Sindy Hu, Wen-Hung Chung, Shuen-Iu Hung, Hsin-Chun Ho, Zen-Whe Wang, Chien-Hsun Chen, Shu-Chuan Lu, Tseng-Tong Kuo, Hong-Shang Hong

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

  1. Sporotrichosis in Mexico.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Pooled it
  2. Current Insights intoJournal of fungi (Basel, Switzerland) · 2025
    Article
  3. Veterinary application of LAMP: a simple and visual detection tool for feline sporotrichosis.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  4. Article
  5. Extracutaneous sporotrichosis.Clinical microbiology reviews · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Sporotrichosis: In silico design of new molecular markers for the Sporothrix genus.Revista da Sociedade Brasileira de Medicina Tropical · 2023
    Article
  11. Review
  12. Review
  13. Beyond Domestic Cats: Environmental Detection ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  14. Keratinocyte Response to Infection withJournal of fungi (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Article
  17. A One Health Approach to CombattingJournal of fungi (Basel, Switzerland) · 2020
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sindy HuDepartment of Dermatology, Chang Gung Memorial Hospital, Taipei, Taiwan, Republic of China.
Wen-Hung Chung
Shuen-Iu Hung
Hsin-Chun Ho
Zen-Whe Wang
Chien-Hsun Chen
Shu-Chuan Lu
Tseng-Tong Kuo
Hong-Shang Hong
Memorial Hospital of South Bend · USChang Gung Memorial Hospital · TWInstitute of Biomedical Sciences, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cutaneous sporotrichosis is a chronic granulomatous fungal infection caused by Sporothrix schenckii with worldwide distribution. Its traditional diagnosis is time-consuming and difficult to differentiate from that of a clinical sporotrichoid lesion caused by various pathogens. In this study, a nested PCR assay for the detection of S. schenckii was evaluated by using a sequence of 18S rRNA gene as a target. For the examination of specificity and sensitivity, five clinical isolates with 1 ATCC 10213 strain of S. schenckii, 10 strains of clinical common fungi, 3 strains of Mycobacterium spp., Staphylococcus aureus, and normal human skin tissue were used. The expected fragment was amplified from six S. schenckii isolates in the first round and nested PCR but not from other microorganisms and human DNA. Their sequences were 100% identical to the S. schenckii 18S rRNA gene sequence deposited in GenBank. A detection limit of 40 fg of S. schenckii DNA extract was determined with ethidium bromide staining. Serial dilution studies demonstrated that the nested PCR could detect a DNA amount of 1 CFU of S. schenckii in tissue samples. We further investigated the nested PCR assay for the detection of S. schenckii from the tail tissues of 5 experimentally infected mice and from the clinical biopsy specimens of 12 patients with sporotrichosis confirmed by culture or histochemical staining. The nested PCR assay was positive in all 5 infected mice and in 11 of the 12 clinical specimens. The high sensitivity and specificity of this nested PCR indicate that the assay can provide rapid diagnosis with sufficient accuracy to be clinically useful for patients with sporotrichosis.

Indexed as

AnimalsDermatomycosesDNA, FungalDNA, RibosomalFemaleHumansMiceMice, Inbred ICRPolymerase Chain ReactionRNA, Ribosomal, 18SSensitivity and SpecificitySequence Analysis, DNASporothrixSporotrichosisDNA, FungalDNA, RibosomalRNA, Ribosomal, 18S

Identifiers

PMID12682123
PMCPMC153868
OpenAlexW2116254824

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.