Evidence map›Paper›PMID 12682015›Full record

ArticleThe EMBO journal2003

Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators.

Jan D Kahmann, Hans-Jürgen Sass, Martin G Allan, Haruo Seto, Charles J Thompson, Stephan Grzesiek

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Vitamin BMicrobiology spectrum · 2024
    Article
  3. A finely balanced order-disorder equilibrium sculpts the folding-binding landscape of an antibiotic sequestering protein.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  14. Structural basis and dynamics of multidrug recognition in a minimal bacterial multidrug resistance system.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jan D KahmannDivision of Structural Biology, Biozentrum der Universität Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.
Hans-Jürgen Sass
Martin G Allan
Haruo Seto
Charles J Thompson
Stephan Grzesiek
University of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The TipAL protein, a bacterial transcriptional regulator of the MerR family, is activated by numerous cyclic thiopeptide antibiotics. Its C-terminal drug-binding domain, TipAS, defines a subfamily of broadly distributed bacterial proteins including Mta, a central regulator of multidrug resistance in Bacillus subtilis. The structure of apo TipAS, solved by solution NMR [Brookhaven Protein Data Bank entry 1NY9], is composed of a globin-like alpha-helical fold with a deep surface cleft and an unfolded N-terminal region. Antibiotics bind within the cleft at a position that is close to the corresponding heme pocket in myo- and hemoglobin, and induce folding of the N-terminus. Thus the classical globin fold is well adapted not only for accommodating its canonical cofactors, heme and other tetrapyrroles, but also for the recognition of a variety of antibiotics where ligand binding leads to transcriptional activation and drug resistance.

Indexed as

Amino Acid SequenceAnti-Bacterial AgentsBacterial ProteinsBinding SitesDrug Resistance, MultipleLigandsModels, MolecularMolecular Sequence DataMolecular StructureNuclear Magnetic Resonance, BiomolecularProtein FoldingProtein Structure, SecondaryProtein Structure, TertiarySequence AlignmentStructure-Activity RelationshipTrans-ActivatorsAnti-Bacterial AgentsBacterial ProteinsBmrR protein, bacteriaLigandsMta protein, Bacillus subtilisTipAL protein, StreptomycestipAS protein, StreptomycesTrans-Activators

Identifiers

PMID12682015
PMCPMC154473
OpenAlexW1991112973

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.