Evidence map›Paper›PMID 12672694›Full record

ArticleGenes & development2003

XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators.

John Gately Luz, Christian A Hassig, Catherine Pickle, Adam Godzik, Barbara J Meyer, Ian A Wilson

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Genes & development, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Evolution of sex determination in crustaceans.Marine life science & technology · 2023
    Review
  7. The X chromosome in C. elegans sex determination and dosage compensation.Current opinion in genetics & development · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Targeting X chromosomes for repression.Current opinion in genetics & development · 2010
    Review
  20. The worm solution: a chromosome-full of condensin helps gene expression go down.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

John Gately LuzDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Christian A Hassig
Catherine Pickle
Adam Godzik
Barbara J Meyer
Ian A Wilson
Howard Hughes Medical Institute · USUniversity of California, Berkeley · USScripps Research Institute · US

Funding

PATHOGENESIS AND IMMUNOLOGY OF DISEASET32AI007244 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1985 to 2022
$8.8M
NEMATODE SEX DETERMINATIONR01GM030702 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MEYER, BARBARA J · 1985 to 2018
$6.1M
NEMATODE SEX DETERMINATIONR37GM030702 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MEYER, BARBARA J · 1995 to 2004
$2.0M
DIRECTED EVOLUTION OF CATALYTIC ANTIBODIESR01GM038273 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI WILSON, IAN A · 1991 to 2004
$1.6M
ANTIBODIES AS CATALYSTSR29GM038273 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI HILVERT, DONALD M · 1987 to 1991
–
NIAID NIH HHS T32 AI007244NIGMS NIH HHS GM30702NIGMS NIH HHS GM38273NIGMS NIH HHS R01 GM030702NIGMS NIH HHS R01 GM038273NIGMS NIH HHS R37 GM030702
6 · The paper itself

Abstract

In Caenorhabditis elegans, an X chromosome-counting mechanism specifies sexual fate. Specific genes termed X-signal elements, which are present on the X chromosome, act in a concerted dose-dependent fashion to regulate levels of the developmental switch gene xol-1. In turn, xol-1 levels determine sexual fate and the activation state of the dosage compensation mechanism. The crystal structure of the XOL-1 protein at 1.55 A resolution unexpectedly reveals that xol-1 encodes a GHMP kinase family member, despite sequence identity of 10% or less. Because GHMP kinases, thus far, have only been characterized as small molecule kinases involved in metabolic pathways, for example, amino acid and cholesterol synthesis, XOL-1 is the first member that controls nonmetabolic processes. Biochemical investigations demonstrated that XOL-1 does not bind ATP under standard conditions, suggesting that XOL-1 acts by a mechanism distinct from that of other GHMP kinases. In addition, we have cloned a XOL-1 ortholog from Caenorhabditis briggsae, a related nematode that diverged from C. elegans approximately 50-100 million years ago. These findings demonstrate an unanticipated role for GHMP kinase family members as mediators of sexual differentiation and dosage compensation and, possibly, other aspects of differentiation and development.

Indexed as

Caenorhabditis elegans ProteinsDosage Compensation, GeneticSex Determination ProcessesX ChromosomeAdenosine TriphosphatasesAdenosine TriphosphateAmino Acid SequenceAnimalsCaenorhabditisCaenorhabditis elegansCloning, MolecularCrystallizationCrystallography, X-RayDisorders of Sex DevelopmentHelminth ProteinsMolecular Sequence DataAdenosine TriphosphatasesAdenosine TriphosphateCaenorhabditis elegans ProteinsHelminth Proteinshomoserine kinasemevalonate kinasephosphomevalonate kinasePhosphotransferases (Alcohol Group Acceptor)Phosphotransferases (Phosphate Group Acceptor)XOL-1 protein, C elegans

Identifiers

PMID12672694
PMCPMC196039
OpenAlexW2162980843

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.