Evidence map›Paper›PMID 12671739›Full record

ArticleImmunogenetics2003

Surprisingly minor influence of TRAV11 (Valpha14) polymorphism on NK T-receptor mCD1/alpha-galactosylceramide binding kinetics.

Bee-Cheng Sim, Kaisa Holmberg, Stephane Sidobre, Olga Naidenko, Nathalie Niederberger, Shane D Marine, Mitchell Kronenberg, Nicholas R J Gascoigne

Abstract read
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. The T cell antigen receptor expressed by Valpha14i NKT cells has a unique mode of glycosphingolipid antigen recognition.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Bee-Cheng SimIMM1, Department of Immunology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Kaisa Holmberg
Stephane Sidobre
Olga Naidenko
Nathalie Niederberger
Shane D Marine
Mitchell Kronenberg
Nicholas R J Gascoigne
Scripps Research Institute · USLa Jolla Institute for Immunology · USVertex Pharmaceuticals (United States) · USWashington University in St. Louis · US

Funding

SELECTION OF T-CELL RECEPTOR V-ALPHA REGIONSR01GM048002 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GASCOIGNE, NICHOLAS R · 1994 to 2009
$3.7M
Recognition of bacterial antigens by NKT cellsR01AI045053 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI KRONENBERG, MITCHELL · 2000 to 2010
$3.3M
SOLUBLE T CELL RECEPTOR STUDIES ON MHC RESTRICTIONSR01GM039476 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GASCOIGNE, NICHOLAS R · 1995 to 2006
$2.2M
NCI NIH HHS CA52511NIAID NIH HHS AI45053NIGMS NIH HHS R01 GM39476NIGMS NIH HHS R01 GM48002
6 · The paper itself

Abstract

Defects in natural killer T (NK T) cell function and of interleukin-4 -production in SJL and NOD mice have been linked to susceptibility to autoimmune disease. As SJL and NOD mice both carry the T-cell receptor (TCR) alpha-chain locus "c" (Tcra(c)) haplotype, found in few other strains, we have attempted to determine the influence of Tcra polymorphism on NK T-cell recognition of ligand, selection, and immune responses. The majority of NK T cells use an "invariant" TRAV11J15 (previously called AV14J18 or Valpha14 Jalpha281) alpha- chain paired with either TRBV13-2, BV29, or BV1 to recognize ligands presented by mCD1 molecules, including the glycolipid alpha-galactosylceramide (alpha-GalCer). Sequencing of TRAV11 from the mouse strains B10.A (encoding the Tcra(b) haplotype), B10.A- Tcra(c), and NOD (Tcra(c)) shows that Tcra(c) has a single TRAV11 gene (TRAV11*01) and that Tcra(b) has a single expressed gene (TRAV11*02), plus a closely related pseudogene. There is no apparent difference in alpha-chain J-region usage or in the CDR3alpha sequence at the TRAV11-J15 junction between the haplotypes in TRAV11-bearing NK T cells. Using Biacore and tetramer-binding and decay assays, we have determined that the interaction between Tcra(c) TRAV11*01 NK T TCR and the mCD1/alpha-GalCer complex is slightly weaker than that of Tcra(b) (i.e., TRAV11*02) NK T TCR. These differences are minor compared with differences between agonist and antagonist ligands in other TCR systems, suggesting that it is unlikely that TCR polymorphism explains the defect in NK T cells in the autoimmune mouse strains.

Indexed as

Amino Acid SequenceAnimalsAnimals, CongenicAntigens, CD1Base SequenceDNAGalactosylceramidesGenes, T-Cell Receptor alphaHaplotypesKiller Cells, NaturalKineticsMiceMice, Inbred C57BLMice, Inbred NODMolecular Sequence DataPolymorphism, GeneticAntigens, CD1DNAGalactosylceramidesReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID12671739
OpenAlexW1546185190

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.