Evidence map›Paper›PMID 12670968›Full record

ArticleJournal of bacteriology2003

Identification and characterization of a mandelamide hydrolase and an NAD(P)+-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633.

Michael J McLeish, Malea M Kneen, Kota N Gopalakrishna, Carolyn W Koo, Patricia C Babbitt, John A Gerlt, George L Kenyon

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Michael J McLeishCollege of Pharmacy, University of Michigan, Ann Arbor, Michigan 48109, USA. mcleish@umich.edu
Malea M Kneen
Kota N Gopalakrishna
Carolyn W Koo
Patricia C Babbitt
John A Gerlt
George L Kenyon
University of California, San Francisco · USUniversity of Michigan–Ann Arbor · USUniversity of Illinois Urbana-Champaign · US

Funding

RESTRUCTURING CATALYSIS IN THE MANDELATE PATHWAYR01GM040570 · NIGMS · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI GERLT, JOHN A · 1989 to 2000
$358k
NIGMS NIH HHS GM40570
6 · The paper itself

Abstract

The enzymes of the mandelate metabolic pathway permit Pseudomonas putida ATCC 12633 to utilize either or both enantiomers of mandelate as the sole carbon source. The genes encoding the mandelate pathway were found to lie on a single 10.5-kb restriction fragment. Part of that fragment was shown to contain the genes coding for mandelate racemase, mandelate dehydrogenase, and benzoylformate decarboxylase arranged in an operon. Here we report the sequencing of the remainder of the restriction fragment, which revealed three further open reading frames, denoted mdlX, mdlY, and mdlD. All were transcribed in the opposite direction from the genes of the mdlABC operon. Sequence alignments suggested that the open reading frames encoded a regulatory protein (mdlX), a member of the amidase signature family (mdlY), and an NAD(P)(+)-dependent dehydrogenase (mdlD). The mdlY and mdlD genes were isolated and expressed in Escherichia coli, and the purified gene products were characterized as a mandelamide hydrolase and an NAD(P)(+)-dependent benzaldehyde dehydrogenase, respectively.

Indexed as

Aldehyde OxidoreductasesAmidohydrolasesAmino Acid SequenceBenzaldehyde Dehydrogenase (NADP+)Cloning, MolecularEscherichia coliMandelic AcidsMolecular Sequence DataOpen Reading FramesOperonPseudomonas putidaRestriction MappingSequence AlignmentTranscription, GeneticAldehyde OxidoreductasesAmidohydrolasesBenzaldehyde Dehydrogenase (NADP+)mandelamideMandelic Acids

Identifiers

PMID12670968
PMCPMC152609
OpenAlexW2126479848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.