Evidence map›Paper›PMID 12668448›Full record

ArticleBiophysical journal2003

Comparative structural studies of Vpu peptides in phospholipid monolayers by x-ray scattering.

Songyan Zheng, Joseph Strzalka, David H Jones, Stanley J Opella, J Kent Blasie

Open access · bronzeAbstract readComparative StudyEvaluation StudyValidation Study
In one paragraph

Article in Biophysical journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Songyan ZhengDepartment of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA.
Joseph Strzalka
David H Jones
Stanley J Opella
J Kent Blasie
University of California, San Diego · USUniversity of Pennsylvania · US

Funding

STRUCTURE DETERMINATION OF VPU FROM HIV 1P01GM056538 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MONTAL, MAURICIO S · 1997 to 2002
$1.6M
NIGMS NIH HHS GM56538
6 · The paper itself

Abstract

Vpu is an 81-residue HIV-1 accessory protein, its transmembrane and cytoplasmic domains each responsible for one of its two functions. Langmuir monolayers of phospholipid incorporating a membrane protein with a unidirectional vectorial orientation, on a semiinfinite aqueous subphase, provide one "membranelike" environment for the protein. The cytoplasmic domain's interaction with the surface of the phospholipid monolayer in determining the tertiary structure of the peptide within the monolayer was investigated, employing a comparative structural study of Vpu with its submolecular fragments Tm and TmCy truncated to different extents in the cytoplasmic domain, via synchrotron x-ray scattering utilizing a new method of analysis. Localizations of the transmembrane and cytoplasmic domains within the monolayer profile structure were similar for all three proteins, the hydrophobic transmembrane helix within the hydrocarbon chain region tilted with respect to the monolayer plane and the helices of the cytoplasmic domains lying on the surface of the headgroups parallel to the monolayer plane. The thickness of the hydrocarbon chain region, determined by the tilt of the hydrocarbon chains and transmembrane domain with respect to the monolayer plane, was slightly different for Tm, TmCy, and Vpu systematically with protein/lipid mole ratio. Localization of the helices in the cytoplasmic domains of the three proteins relative to the headgroups depends on their extents and amphipathicities. Thus, the interaction of the cytoplasmic domain of Vpu on the surface may affect the tilt of the transmembrane helix within the hydrocarbon chain region in determining its tertiary structure in the membrane.

Indexed as

Membranes, ArtificialModels, MolecularAmino Acid SequenceComputer SimulationCrystallographyHuman Immunodeficiency Virus ProteinsMolecular Sequence DataPeptide FragmentsPhosphatidylcholinesPhospholipidsProtein ConformationProtein Structure, TertiaryProtein SubunitsViral Regulatory and Accessory ProteinsViroporin ProteinsX-Ray Diffraction1,2-linoleoylphosphatidylcholineHuman Immunodeficiency Virus ProteinsMembranes, ArtificialPeptide FragmentsPhosphatidylcholinesPhospholipidsProtein SubunitsViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID12668448
PMCPMC1302806
OpenAlexW2086071278

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.