Evidence map›Paper›PMID 12665621›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

alpha-Synuclein maps to a quantitative trait locus for alcohol preference and is differentially expressed in alcohol-preferring and -nonpreferring rats.

Tiebing Liang, John Spence, Lixiang Liu, Wendy N Strother, Hwai Wen Chang, Julie A Ellison, Lawrence Lumeng, Ting-Kai Li, Tatiana Foroud, Lucinda G Carr

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 126 citations in OpenAlex.

  1. Article
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  4. Review
  5. Estrogen-Dependent Upregulation ofFrontiers in genetics · 2018
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  15. Review
  16. The influence of sex and estrous cycle on QTL for emotionality and ethanol consumption.Mammalian genome : official journal of the International Mammalian Genome Society · 2011
    Article
  17. Article
  18. Article
  19. Article
  20. Identification of genes influencing skeletal phenotypes in congenic P/NP rats.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Tiebing LiangDepartment of Medicine, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
John Spence
Lixiang Liu
Wendy N Strother
Hwai Wen Chang
Julie A Ellison
Lawrence Lumeng
Ting-Kai Li
Tatiana Foroud
Lucinda G Carr
National Institutes of Health · USIndiana University – Purdue University Indianapolis · USIndiana University School of MedicineNational Institute on Alcohol Abuse and Alcoholism · US

Funding

Translational Research and Science Education (OUT)P60AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DAVID A. KAREKEN · 2003 to 2026
$45.5M
RAT RESEARCH COMPONENTP50AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI CHRISTIAN, JOE C · 1987 to 2002
$5.3M
QTL MAPPING OF ALCOHOL PREFERENCE IN SELECTED RAT LINESR01AA010707 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI LIANG, TIEBING · 1995 to 2008
$2.8M
NIAAA NIH HHS AA00285NIAAA NIH HHS AA07611NIAAA NIH HHS AA10707NIAAA NIH HHS P50 AA007611NIAAA NIH HHS P60 AA007611NIAAA NIH HHS R01 AA010707
6 · The paper itself

Abstract

Total gene expression analysis (TOGA) was used to identify genes that are differentially expressed in brain regions between the alcohol-naive, inbred alcohol-preferring (iP), and -nonpreferring (iNP) rats. alpha-Synuclein, expressed at >2-fold higher levels in the hippocampus of the iP than the iNP rat, was prioritized for further study. In situ hybridization was used to determine specific brain regions and cells expressing alpha-synuclein in the iP and iNP rats. Similar to alpha-synuclein mRNA levels, protein levels in the hippocampus were higher in iP rats than iNP rats. Higher protein levels were also observed in the caudate putamen of iP rats compared with iNP rats. Sequence analysis identified two single nucleotide polymorphisms in the 3' UTR of the cDNA. The polymorphism was used to map the gene, by using recombination-based methods, to chromosome 4, within a quantitative trait locus for alcohol consumption that was identified in the iP and iNP rats. A nucleotide exchange in the iNP 3' UTR reduced expression of the luciferase reporter gene in SK-N-SH neuroblastoma cells. These results suggest that differential expression of the alpha-synuclein gene may contribute to alcohol preference in the iP rats.

Indexed as

Quantitative Trait Loci3' Untranslated RegionsAlcohol Drinkingalpha-SynucleinAnimalsBase SequenceCell LineChromosome MappingDNA, ComplementaryGene ExpressionHippocampusHumansMaleNerve Tissue ProteinsPolymorphism, Single NucleotideRats3' Untranslated Regionsalpha-SynucleinDNA, ComplementaryNerve Tissue ProteinsRecombinant ProteinsRNA, MessengerSNCA protein, humanSnca protein, ratSynucleins

Identifiers

PMID12665621
PMCPMC153617
OpenAlexW1979306070

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.