Evidence map›Paper›PMID 12663547›Full record

ArticleGenetics2003

A high-copy-number CACTA family transposon in temperate grasses and cereals.

Tim Langdon, Glyn Jenkins, Robert Hasterok, R Neil Jones, Ian P King

Abstract read
In one paragraph

Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. On the Trail ofInternational journal of molecular sciences · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
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  12. Article
  13. Article
  14. Revolver is a new class of transposon-like gene composing the triticeae genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2008
    Article
  15. Ac-like transposons in populations of wild diploid Triticeae species: comparative analysis of chromosomal distribution.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2006
    Article
  16. Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  17. Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tim LangdonInstitute of Grassland and Environmental Research, Aberystwyth, Ceredigion, SY23 3EB, United Kingdom. tlangdon@hgmp.mrc.ac.uk
Glyn Jenkins
Robert Hasterok
R Neil Jones
Ian P King

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A lineage of CACTA family transposons has been identified in temperate grasses and cereals, and a full-length representative of the subfamily from Lolium perenne has been sequenced. Both the size and internal organization of the L. perenne element are typical of other CACTA family elements but its high copy number and strong conservation are unexpected. Comparison with homologs in other species suggests that this lineage has adopted a distinct and novel evolutionary strategy, which has allowed it to maintain its presence in genomes over long periods of time.

Indexed as

Amino Acid SequenceBase SequenceConserved SequenceCrosses, GeneticDNA PrimersDNA Transposable ElementsEdible GrainIn Situ Hybridization, FluorescenceMolecular Sequence DataMultigene FamilyPhylogenyPlant ProteinsPoaceaePolymerase Chain ReactionRibonuclease HSequence AlignmentDNA PrimersDNA Transposable ElementsPlant ProteinsRibonuclease H

Identifiers

PMID12663547
PMCPMC1462479

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.