Evidence map›Paper›PMID 12663538›Full record

ArticleGenetics2003

Coupled mutagenesis screens and genetic mapping in zebrafish.

John F Rawls, Matthew R Frieda, Anthony R McAdow, Jason P Gross, Chad M Clayton, Candy K Heyen, Stephen L Johnson

Abstract read
In one paragraph

Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  5. Review
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  11. Article
  12. Osteoblast maturation occurs in overlapping proximal-distal compartments during fin regeneration in zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2009
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Rapid genetic mapping in Neurospora crassa.Fungal genetics and biology : FG & B · 2007
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

John F RawlsDepartment of Genetics, Washington University School of Medicine, Saint Louis, Missouri 63110, USA.
Matthew R Frieda
Anthony R McAdow
Jason P Gross
Chad M Clayton
Candy K Heyen
Stephen L Johnson

Funding

REGULATION OF ADULT STEM CELLS IN ZEBRAFISHR01GM056988 · NIGMS · WASHINGTON UNIVERSITY · PI JOHNSON, STEPHEN L · 1998 to 2016
$6.0M
NIGMS NIH HHS R01-GM56988
6 · The paper itself

Abstract

Forward genetic analysis is one of the principal advantages of the zebrafish model system. However, managing zebrafish mutant lines derived from mutagenesis screens and mapping the corresponding mutations and integrating them into the larger collection of mutations remain arduous tasks. To simplify and focus these endeavors, we developed an approach that facilitates the rapid mapping of new zebrafish mutations as they are generated through mutagenesis screens. We selected a minimal panel of 149 simple sequence length polymorphism markers for a first-pass genome scan in crosses involving C32 and SJD inbred lines. We also conducted a small chemical mutagenesis screen that identified several new mutations affecting zebrafish embryonic melanocyte development. Using our first-pass marker panel in bulked-segregant analysis, we were able to identify the genetic map positions of these mutations as they were isolated in our screen. Rapid mapping of the mutations facilitated stock management, helped direct allelism tests, and should accelerate identification of the affected genes. These results demonstrate the efficacy of coupling mutagenesis screens with genetic mapping.

Indexed as

Chromosome MappingAnimalsAnimals, Inbred StrainsBase SequenceCrosses, GeneticDNA PrimersGenetic MarkersMelanocytesModels, GeneticMutagenesisZebrafishDNA PrimersGenetic Markers

Identifiers

PMID12663538
PMCPMC1462478

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.